KEGG   Populus trichocarpa (black cottonwood): 7468530
Entry
7468530           CDS       T01077                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04120  Ubiquitin mediated proteolysis
pop04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    7468530
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    7468530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7468530
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     7468530
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    7468530
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     7468530
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st zf-C3HC4_2 EIF3I Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st zf-C3HC4 WD40_like Beta-prop_EML WD40_RFWD3 Beta-prop_CAF1B_HIR1 zf-RING_2 zf-C3HC4_3 Beta-prop_WDR35_TULP_N zf-RING_UBOX zf-C3HC4_4 U-box Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_WDR75_1st DUF1664 zf-RING_5 Beta-prop_IFT122_2nd zf-rbx1 zf-RING_10 zf-RING_6
Other DBs
NCBI-GeneID: 7468530
NCBI-ProteinID: XP_024441350
LinkDB
Position
14:complement(11323963..11331561)
AA seq 672 aa
MEEVSTGAIVPAVKPEPKPSTSTAAAVASPEPSSAPSAEEAELEKDFLCPICMQIIKDAF
LTVCGHSFCYMCITTHLRNKNDCPCCSHYLTTNQLFPNFLLQKLLKKASARQTSKNASPI
EHFRQSLQQGCEVSIKDLDTLMSLLAERKRKMEQEEAERNMQVLLDFLHYLRKQKVDELN
EVRTDLRYIKEDIDAVEKHRIELYRARDRYSMKLRMLGDDLTVRKPWPSTIDKNHSGVVT
SSLNARGLTTGNIPIKKMDGKAQVSSHGLQRKDTSGGSDPQYNHSGLSAVKKKRVHAQFN
DLQDCYLQKRRQLANHPHNQSERDKNVIHREGYNAGLADFQSVLGTFTQYSRLRVIAELR
HGDIFHSANIVSSIEFDRDDEFFATAGVSRRIKVFDFSSVVNEPADVHCPVVEMSTRSKL
SCLSWNKFTKNQIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGS
DDCKVKVWCTKQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHQIHYYDLRNVTNPLY
VFSGHRKTVSYVKFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLSVSSE
YIACGSETNEVFVYHKEISKPVTWHRFGSPEMDDADEDAGSYFISAVCWKSDSPTMLSAN
SQGTIKVLVLAA
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggaagaggtttcaacgggggccatcgtcccagcggtaaagccagagccgaaaccctca
acatccacggctgccgcagttgcgtcgcctgagccctcctccgccccgagcgcagaagaa
gctgagttagagaaggatttcctctgcccgatttgcatgcagattataaaagatgccttc
ctcacagtatgtggtcacagcttttgctacatgtgcatcaccactcacctccgtaacaag
aacgattgcccttgctgtagccattacctcactaccaatcagctcttccctaatttcttg
ctccaaaagctattaaagaaggcctctgctcgtcaaacatccaagaatgcgtcgcctatt
gaacattttcgccaatccttacagcagggttgtgaagtttcaattaaggacctggacacc
ctcatgtcacttcttgcagagaggaagagaaaaatggaacaagaagaagctgagagaaat
atgcaggtgctgctagacttcttgcactacttgcggaagcaaaaggtggatgaattgaat
gaggtacgaactgatcttcgatatattaaggaggacatagatgctgtagagaaacacaga
attgagctgtatcgtgccagggataggtattctatgaaattgcgaatgcttggagatgat
ctcactgtgagaaaaccgtggccttcaacaattgataagaaccacagtggtgttgtcacc
agttctcttaatgccagagggctgactactgggaatattccaatcaagaaaatggatgga
aaggctcaagtaagctctcatgggctccagagaaaggatacatcgggtgggtctgacccg
caatataatcactcaggtttatctgcagtgaagaaaaagcgcgtgcatgcacagttcaat
gacctgcaagattgttacttgcaaaagcgccgccagttggcaaatcatccacataaccag
tcagaaagggataaaaatgtcattcatagagagggctacaatgctggtcttgcagatttt
caatctgtgctgggtacatttactcagtacagtcggttaagggtcattgctgaactcagg
cacggggatatatttcactcggccaatatagtatcaagcatagaatttgaccgtgatgat
gaattttttgctactgctggagtttcacggcgaatcaaagtgtttgacttttcttctgtt
gtgaatgaacctgcagatgtgcactgccctgttgtggagatgtctacacgttctaaactt
agctgcttgagttggaacaagtttactaaaaatcaaatagccagtagtgattacgaggga
atagtaactgtttgggatgtgacaaccaggcagagtgtgatggaatacgaagagcatgaa
aaacgtgcatggagtgttgatttttctcgcacagaaccttctatgcttgtatctggtagc
gatgattgtaaggtcaaagtttggtgcacaaagcaggaggcgagcgttctaaacattgac
atgaaagcaaatatttgttgtgtcaagtacaatcctggatctagcaattatattgcggtt
ggttcagcagaccaccagattcactactatgatttgagaaatgtcaccaatccactctat
gtgttcagcgggcacaggaaaactgtttcatatgtaaaattcttatctaacagcgagctt
gcttcagcgtcaacagacagcacattaaggttatgggatgtaaaagagaatctgcctgtt
cgtacctttagaggccacacaaacgagaaaaactttgtgggtctctcagtaagcagtgaa
tatattgcatgtgggagtgaaacaaatgaggtctttgtctaccataaggaaatctctaaa
cctgtgacttggcatagatttggttcccctgagatggacgatgctgatgaggatgcagga
tcttacttcatcagtgctgtttgctggaagagtgacagtcctacaatgctatctgcaaat
agtcagggtacaataaaagtattggttcttgcagcttga

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