Populus trichocarpa (black cottonwood): 7468541
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Entry
7468541 CDS
T01077
Name
(RefSeq) transcription initiation factor TFIID subunit 6 isoform X2
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7468541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7468541
03036 Chromosome and associated proteins [BR:
pop03036
]
7468541
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
7468541
Coactivators
SAGA/TFTC/STAGA complex
7468541
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
7468541
STAGA complex
7468541
TFTC complex
7468541
SAGA complex
7468541
SLIK complex
7468541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
7468541
NCBI-ProteinID:
XP_006375548
UniProt:
U5FQN9
LinkDB
All DBs
Position
14:11552874..11561546
Genome browser
AA seq
536 aa
AA seq
DB search
MSIVAKETIEVIAQSIGISNLSEDVALTLAPDVEFRMRQIMQEAIKCMRHSKRTRLTTDD
VDGALNLTNVEPIYGFASGGALQFKRAIGHRDLFYVDDKDIDFKDVIEAPLPKAPLDTAV
VCHWLAIEGVQPAIPENAPLEVIAPPSDGKISEQNDEFPVDIKLPVKHVLSRELQLYFDK
ITDLTVRRSDSVLFKEALVSLATDSGLHPLIPYFTYFIADEVARGLNDYSLLFALMRVVW
SLLQNPHIHIEPYLHQLMPSVVTCLVARKLGNRFADNHWELRDFTANLVASICKRFGHVY
NSLQTRLTKTLLNALLDPKRSLTQHYGAIQGLAALGPNVVRLLLLPNLKPYLQLLEPEML
LEKQKNEMKRHEAWHVYGALLCAAGQSIYDRLKMFPALMSHPACAVLRTNEKVVTKRPEN
YQDKRKASMEHMEQPPPKKIATDGPVDMQVEPIAPVPLGDSKTGLSTSSEHTPNYSEAGS
RNQKDKGDSQAIKTSAILSQVWKDDLNSGHLLVSLFELFGESILSFIPSPEMSLFL
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgagcatagtagcgaaagagacaatcgaagtgatagcacaaagcataggaatcagcaat
ttgtccgaagatgttgcacttactctcgctcctgatgtcgaattccgcatgcgtcaaatc
atgcaggaagctatcaaatgtatgcgccattccaagaggactagattgactacagatgat
gttgatggtgcgcttaaccttacaaatgttgagccaatatatggctttgcttctggaggt
gctttgcagttcaaaagagctattggtcatagagatttgttttatgttgatgacaaggat
attgattttaaagatgtgattgaggcacctttgccaaaagcaccacttgataccgcagtt
gtttgtcactggctcgctattgaaggtgtccaacctgccatcccagaaaatgctccattg
gaagttattgcacctccttctgatggcaaaatcagcgaacaaaatgatgaatttccagtt
gatatcaaattgccagttaagcatgtattgtctagggagttacagctatactttgataaa
atcacagatcttacagtgagaaggtctgattctgttctctttaaagaagcattagtgagt
ttggccactgactcgggacttcatccgttaattccttatttcacatactttatagcggac
gaggttgctcgtggtttaaatgattattctcttctctttgctttgatgcgtgttgtttgg
agtcttctccagaatcctcacatacacattgaaccttatctgcaccaattgatgccatct
gtagtcacctgccttgttgcgagaaagttagggaatagatttgcagacaaccactgggaa
ctcagggacttcactgctaacttagttgcctcaatatgcaaaagatttgggcatgtttat
aacagtcttcagacacgtttgacaaaaaccttgctcaatgctcttttggacccaaagcgc
tcattgacgcagcattatggagcaatacaaggattggcagctcttgggcctaatgtggtt
cgccttcttctactgccaaatctcaaaccatatctccaacttcttgaaccagagatgctt
cttgaaaagcaaaagaatgagatgaagaggcatgaagcttggcatgtttatggagcgttg
ctgtgtgcagcgggtcaatccatatacgaccgcctcaagatgttcccagcattgatgtcc
cacccagcatgtgctgtattaaggactaatgaaaaagtagttactaaaaggccagaaaac
tatcaagataaacgcaaggcaagcatggagcatatggaacagccgccaccaaagaagata
gcaactgatggtccagtcgatatgcaagtggaaccaatagctccagtccctttaggtgat
tctaaaacaggattgtcgacatcatctgagcatacgcctaattatagcgaagcaggcagc
agaaatcaaaaagacaagggtgatagtcaagctataaagacatcagccattctcagtcag
gtttggaaggacgacttgaattccgggcatcttctggtatccctgtttgagctgtttggt
gagagcatcctctccttcattccatctccggagatgtcattgttcttgtga
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