Populus trichocarpa (black cottonwood): 7468627
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Entry
7468627 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7468627
04121 Ubiquitin system [BR:
pop04121
]
7468627
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7468627
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
7468627
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7468627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
zf-RING_16
Zn_ribbon_FGT1_2
Rad50_zn_hook
zf-RING_5
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
7468627
NCBI-ProteinID:
XP_002313421
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All DBs
Position
9:complement(4497613..4499131)
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AA seq
342 aa
AA seq
DB search
MASTTTTTTSYWCYRCSRFVTVSPHNEDEEHSHTSNITCPHCDGGFVEEIQSNSTSDIRQ
NRSRVSNLTRNRRNAGDRSSFNPVVVLRGTTPAAAAEDNEDGSAYEFYYDDGIGTGLRPV
PEMMSEFLMGSGFDRLLDQLSQIEINSLGRSVPNPPASKVVIESMPSVEINETHVISETY
CAVCKEAFEIGNEAREMPCKHIYHSDCIFPWLAMRNSCPVCRHELPVENSREEEVEGELV
GLTVWRLPGGGFAVGRFSGGRRGGEREFPGVFTEMDGGGNGGLNGSSWPSRDWDSWVTRR
SRRRESTSGTGGFRRVFRGMASFLRRIRPNSSSRMRDGSEEP
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacgacgacgacgacgacgtcgtattggtgttacagatgctcacgcttcgtc
accgtttcacctcacaacgaagacgaagaacacagccacacaagcaacatcacgtgtcct
cactgcgacggtgggttcgtcgaagagatccaatccaactccacctctgatatccgtcaa
aaccgtagccgggtttccaaccttacccgaaaccgccgcaacgccggcgaccggtcttcg
tttaacccagtggtcgtcctccgcggaaccacccctgccgccgctgctgaagacaacgaa
gatggaagcgcctacgagttctactatgacgatggaatcggtacgggtctccgacccgta
ccggagatgatgtctgagtttttaatgggttcaggttttgaccgtttactagaccagtta
tcacagatagagataaacagtttaggccggtcggttcctaacccgccggcatcgaaagtc
gtgattgaatcaatgccgagtgtagaaataaacgaaacgcatgtgatttcggagacgtac
tgtgcagtgtgtaaagaggcgttcgagataggaaacgaagctcgtgagatgccttgtaag
catatttatcattctgattgcatttttccttggcttgcgatgcgaaactcttgtcccgtt
tgcaggcacgagttgcctgtggagaattccagagaggaggaggtggaaggggagcttgtg
gggctaactgtatggaggttgcctggtggtgggtttgctgttgggaggtttagtggggga
aggagaggtggagagagagaatttccgggtgtttttacggagatggatggtggtgggaat
ggtgggcttaacgggagcagttggccgtctcgtgattgggattcttgggtgactaggagg
agtagaagaagagagagtactagtggtactgggggttttaggagagtttttcgtggtatg
gcttcgtttttaaggaggattaggcctaattcgtcgtcaagaatgcgtgatggatctgaa
gaaccttga
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