Populus trichocarpa (black cottonwood): 7468631
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Entry
7468631 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7468631
09122 Translation
03013 Nucleocytoplasmic transport
7468631
03015 mRNA surveillance pathway
7468631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7468631
03041 Spliceosome [BR:
pop03041
]
7468631
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7468631
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
7468631
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
7468631
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
7468631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
7468631
NCBI-ProteinID:
XP_002309623
UniProt:
B9HA46
LinkDB
All DBs
Position
6:complement(25137739..25143505)
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRDNDTYEEELLDYEEEDEKAPDSVGAKVNGEAVKKGYVGIHSSGFRDFLLKPELLR
SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALV
LCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgacacttacgaggaggagcttctagattatgaagaagaa
gacgagaaagcacctgactccgtcggcgctaaagttaacggcgaagccgttaagaaagga
tatgttgggattcacagttcgggattcagagatttccttttgaagccagagctgcttagg
tctattgtcgactcgggttttgagcatccttctgaagtgcaacatgaatgtatccctcaa
gccatcttggggatggatgtcatctgccaagctaaatctggaatgggaaagactgcggtt
tttgttctgtctactcttcagcaaattgagcctacctctggacaagttattgcccttgtt
ctatgtcacactagagagttggcttaccagatctgccacgagtttgagaggttcagtact
tacttgcctgacaccaaggttgctgttttctatggtggtgtcaatatcaaaactcacaag
gatctactgaaaaatgaatgtccccatattgttgttggaacacccggaagaatcctggca
cttgctagagataaggacctttctttgaagaatgtcagacattttatccttgatgaatgt
gacaaaatgcttgaatcactcgacatgaggagagatgttcaggagattttcaagatgact
cctcatgataagcaggttatgatgttttctgcaacgctcagcaaagaaatccgcccagtt
tgcaagaaatttatgcaagatccaatggaaatttacgtcgatgatgaagccaagttgacc
ctccatggtcttgtgcagcactacatcaaactgactgagctggagaaaaacagaaagtta
aatgatcttcttgatgcactggacttcaatcaagttgttatctttgttaaaagtgtgagc
agagcagctgagctgaacaagttactagtggagtgtaatttcccctccatttgcatacat
tctggcatgtcacaggaagaaaggttgatgcgctacaagggtttcaaggagggtcataaa
aggattcttgttgccactgacttggttggcaggggtattgatattgaacgtgtcaacatt
gtcattaactatgacatgccagactcagctgacacttacttgcacagggttggcagagct
ggtaggtttggcacaaaaggccttgcaattacctttgtatcatcagcttcggattctgat
gttctcaaccaggttcaagagaggtttgaggtggatataaaggagcttcctgagcaaatt
gatacatctacatatatgccatcttaa
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