Populus trichocarpa (black cottonwood): 7469070
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Entry
7469070 CDS
T01077
Name
(RefSeq) paired amphipathic helix protein Sin3-like 4 isoform X2
KO
K11644
paired amphipathic helix protein Sin3a
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7469070
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
7469070
REST complex
7469070
Heterochromatin formation proteins
Other heterochromatin formation proteins
7469070
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
7469070
NCBI-ProteinID:
XP_002311786
LinkDB
All DBs
Position
8:13524878..13535137
Genome browser
AA seq
1440 aa
AA seq
DB search
MKRSRDDVYMGSQLKRPVLSSSTKGEASGQPQMIGGGGGGGGGGGGGGGGGQKLTTNDAL
AYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLP
KGYEITLPLEEEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSI
SEVYQEVAALFRDHHDLLLEFTHFLPDSSAAASALFPSARNSAPRDRSSAMPTMRQMHVD
KKERAMASHAERDISVDRPDPDHDRAMIRADKDQRRRVEKEKERREDRDRRDCERDDRDY
DHDGNRDFNQRFPHKRKPARRVEDSAAEQGGDGDESFGGMNPVSSAYDDKNAVKSALSQE
LAFCDKVKETLHNPENYQEFLRCLHLYTREIITRSELQSLVGDLLGKYPDLMDGFNEFLA
LCEKKEGLLAGVVSKSNLPRVLKVEDRDRDRDRERDDGVKDRDREIRERDRLDKSVAFGN
KDTGGHKMSLFPSKDKLPAKPINELDLSNCERCTPSYRLLPKSYMIPPASQRTELGAEVL
NDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKIN
NNTIKMDSPIRIDEHLTALNLRCVERLYGDHGLDVMDVLRKNTSLALPVILTRLKQKQEE
WARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISENKRKEDD
VLLAFAAGNRRPIIPNLEFEYLDPDTHEDLYQLIKYSCAEVCTTEQLDKVMKIWTTFLEP
MLGVPSRPQGAEDTEDVVKAKNQSSKSGESEGSPSGGGAVTNSKHSNPSRNGDESIQPEQ
SSSSRAWMLNGENRVKENGSPDADHVARKSDTSTSTLQHDKVLINAAAADELSGVTKQAP
SNDRLLNSNASLVTGAELSNGRTLVESGLSATPSRPSNGTVEGGLGIGSSNEILPSTEGG
EFSRPPVSTNGVATEVIKSNRYNDESAAQFKIEREEGELSPNGDFEEDNFAVYGEAGLEA
AHKVKDSAVSRQYQARQGEECGEAGGENDADADDEGGESAQRSSEDSENASENGDVSGSE
SGDGEDCSREEHEEDGDHDEHDNKAESEGEAEGMADAHDVEGEGTILPFSERFLLNVKPL
AKHVPPSLHDKEKGFRVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAERKWRASNDTSP
TDLYARFMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDE
MDNKLLQLYAYEKSRKHGRFVDIVCHENARVLLHDENIYRIECSSAPTRLSIQLMDFGHD
KPEVTAVSMDPNFASYLHNDFLSVVPDKKEKPGIFLKRNKHRYSDADECQAMEGFRVLNG
LECKIACNSSKVSYVLDTEDFLFRPQKKSKTLQQNGSCHDDQAKISKRVQRFHRLLSSSS
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggtcaagagatgatgtttacatggggtctcaacttaaaaggcctgtgctctct
tcttccactaaaggcgaagcttctgggcaacctcagatgattggagggggaggtggtggt
ggtggaggaggaggaggaggaggaggaggaggacagaaactgacaacaaatgatgccttg
gcatatctcaaggctgtcaaggatatatttcaagacaagagagaaaagtacgatgacttt
cttgaggtcatgaaggatttcaaagctcaaagaattgacactgcgggtgtcatagcaagg
gtgaaggagttatttaaagggcaccgcgatttaattttgggtttcaataccttcttgcca
aaaggatatgagatcaccctcccactggaagaagaacaacctccgcagaaaaagccagtt
gaatttgaagaagcaattaattttgtgaacaaaattaagacaaggtttcaaggtgatgat
catgtttacaaatcttttttagacattttgaacatgtacagaaaggaaaataagtccatc
agtgaggtctaccaggaggtggctgcactttttcgagaccaccatgatctgctcttggag
ttcactcatttccttcctgattcttcagctgccgccagtgctctttttccgtctgccagg
aattctgctccccgtgacagaagttctgccatgcctacaatgcgccaaatgcatgttgac
aagaaagaaagggctatggcctcacatgctgaacgtgacatcagtgttgaccgtcccgat
cccgaccatgatagggctatgatcagagcagataaggatcaacgcaggcgtgttgaaaaa
gaaaaggagaggagagaagacagagataggagggattgtgagcgagatgatagagattat
gatcatgatggaaatcgagacttcaaccaacgattccctcacaagcggaaacctgctcgt
agagttgaagattcagctgctgaacaaggtggggatggtgatgagagcttcggaggaatg
aatcctgtttcatcagcttatgatgataaaaatgctgtaaaaagtgcattaagtcaagag
cttgctttttgtgacaaagtcaaggagacgttgcacaatcctgaaaattaccaggaattt
ttgagatgtcttcatctctataccagagaaataatcacacgatcagagttgcaatctttg
gtgggtgatttgcttggaaaatatccggatctcatggacgggttcaatgaattcttggca
ctatgtgaaaaaaaggagggtctccttgctggtgttgtgagtaaaagtaatttacccaga
gttttgaaagtagaagaccgagatagagatcgggatcgtgagagagatgatggggtcaaa
gatagagaccgtgaaatccgagaaagggataggcttgacaaaagtgtagcctttggaaat
aaggacacgggaggtcacaaaatgtctttatttcccagcaaggataagcttccagcaaaa
cccattaatgaacttgacttatctaactgcgagcgctgcactcccagttatcggcttcta
ccaaagagttacatgatacctcctgcaagtcagaggaccgagcttggtgctgaagtactg
aatgatcattgggtatctgttacttcaggaagtgaagattactcttttaaacatatgcgg
aaaaaccagtatgaagagagcttgtttcgatgtgaagatgacaggtttgagctggacatg
ctgttagaatctgtgaatgtaaccaccaagcgtgtggaggaattattagaaaagatcaac
aataacacgatcaaaatggatagtccaatccgtattgatgagcacttaacagctctgaat
ctgaggtgtgttgaacgtttatatggcgaccacgggcttgatgtaatggatgtattgagg
aagaacacttctcttgctttgccagttatattaactcgcttgaagcagaaacaagaagag
tgggcaaggtgtcgtgctgattttaacaaagtttgggctgaaatttatgccaaaaactat
cacaaatcacttgatcatcgtagcttctatttcaagcagcaggatacaaagagcttgagc
acaaaagccttactggcggagatcaaagaaattagtgagaataagcgcaaggaagatgat
gtgcttcttgcttttgctgctggaaacagacgacctattataccaaatttggaatttgag
tacctagatcctgacactcatgaggacttgtatcaactcatcaaatattcatgtgcggaa
gtttgtacaactgaacagttagataaagtgatgaagatttggacaaccttcttagaaccc
atgcttggtgttccgtcccggcctcagggtgccgaggacactgaagatgttgtaaaagct
aagaatcagtcttctaaaagtggagagagtgaaggcagccctagtggtggtggtgcggtc
acaaactccaaacattcgaatccttcaagaaatggagatgaaagtatccaacctgaacaa
tcaagttctagcagggcttggatgctaaatggagaaaacagggttaaagaaaatggttct
cctgatgcggatcacgtggctcgcaaaagtgatacttccacaagcactcttcaacatgat
aaggtgctgatcaatgcagctgcagctgatgaattgtcaggggtcactaaacaagctcct
tccaatgaccgactactaaattcaaatgcatctcttgtcactggggcagagttaagtaat
ggacgaactcttgttgaatcagggcttagtgctaccccttcaagaccaagtaatggcact
gttgagggagggcttggaataggttcgagtaatgaaatattaccgtcaacagagggtggt
gaattttcaagaccccctgtatccacaaatggggtggcaacagaagtcatcaagagtaac
agatataatgatgaatctgctgcacaatttaaaattgaaagagaagagggtgaattatct
ccaaatggagattttgaggaggataattttgcagtttatggagaagctggtttggaggca
gcgcataaggtgaaggacagtgctgttagtaggcaatatcaagccagacagggagaagaa
tgtggagaggcagggggggagaatgacgctgatgctgatgatgaaggcggtgaaagtgct
caaaggtcatcagaggatagtgagaatgcctctgagaatggtgatgtttctggaagtgag
tctggtgatggtgaagattgctctcgggaagagcatgaggaagatggtgaccatgatgag
catgataataaagctgagagtgaaggtgaggccgaaggaatggctgatgcccacgatgtt
gaaggagaaggaacgattttaccattttcagaacgttttcttctaaacgtgaagcctttg
gcaaagcatgtccccccttcattgcatgacaaagaaaaaggttttcgggttttctatgga
aatgattccttctatgtgctttttaggcttcaccaaacattatatgagagaatacaatca
gcaaaggttaattcatcatctgccgagaggaaatggagagcttcaaatgacactagtcct
actgatctttatgccagattcatgagtgcactttacaacttacttgatggttcttctgac
aatacaaaatttgaggatgattgccgggctattattgggacacagtcatatgttctattc
acattggacaaactaatatataagcttgtcaaacagctccaaaccgtggcaacggatgaa
atggacaacaagttgctccaactatatgcatatgaaaaatcaaggaaacatggaagattt
gtggatattgtttgtcatgaaaatgctcgcgtgcttcttcatgatgagaacatatatcgt
attgaatgttcttctgcaccaacccgcttgtctattcagcttatggactttggacacgat
aaacccgaagttactgctgtttccatggatcctaattttgcatcatatctgcataatgat
ttcctctctgttgttcccgacaaaaaagagaagccagggattttcttgaagaggaataaa
catagatattcagatgctgacgagtgccaggccatggaagggtttcgggttttgaacggt
ttagagtgtaaaattgcttgcaattcctcaaaggtgtcctatgttttagacacagaagat
tttttgttccgaccacaaaagaaaagcaaaactttgcagcagaatggctcatgccacgac
gaccaggcaaagatttccaaaagagtacaacggtttcacagactgctatctagctcatca
taa
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