Populus trichocarpa (black cottonwood): 7469154
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Entry
7469154 CDS
T01077
Name
(RefSeq) long chain acyl-CoA synthetase 9, chloroplastic
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00061
Fatty acid biosynthesis
pop00071
Fatty acid degradation
pop01100
Metabolic pathways
pop01212
Fatty acid metabolism
pop04146
Peroxisome
Module
pop_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
7469154
00071 Fatty acid degradation
7469154
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
7469154
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pop01004
]
7469154
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7469154
Enzymes [BR:
pop01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
7469154
Lipid biosynthesis proteins [BR:
pop01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
7469154
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of breast milk
7469154
Exosomal proteins of breast cancer cells
7469154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
PKcGMP_CC
Motif
Other DBs
NCBI-GeneID:
7469154
NCBI-ProteinID:
XP_002306635
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Position
5:18337812..18344031
Genome browser
AA seq
697 aa
AA seq
DB search
MIPYIVAILVPLIITLLYQKSKNAKKRGVPVDVGGEPGYAIRNAQFPTLLETAWEGVSTL
AQLFEMACKKHGHKCLLGTRTLISKDTEVSANGRSFEKLHLGEYEWLTYGQVFEKVCNFA
SGLAHLGLRSEERVAIFADTRAEWFISLQGCFRRNVSVVTIYASLGEEALCYSLNETEVT
AVICGAKELKKLAEVSGQLETVKYIICMDDETPSSASSMAQSGRWRVVSVADVEKLGREN
PVDAALPLSEDVAVIMYTSGSTGLPKGVMMTHGNVLAVVSSVRTIVTGLEDKDVYLAYLP
LAHILEIAAENVVAGAGSAIGYGTPMTLTDTSNKIKRGTKGDATVLRPTVMAAVPAILDR
VRDGVQKKVDAKGGLTKKLFDFAYARRISAINGSWFGARGIELLLWNFLVFRKVRAVLGG
RIRFLLSGGAPLSGDTQRFINICLGAPICQGYGLTETCAGGTFSEFDDPSVGRVGNPVPC
SYIKLIDWPEGGYLISNSPMPRGEIVIGGPNVTLGYFKNEAKTKEVYKVDERGMRWFYTG
DIGQFHADGCLEIIDRKKDIVKLQHGEYISLGKVEAALVVSPYVENIMLDADPFHSYCVA
LVVAAQPALEEWASKKGIAFTDFAELCEKEETIKELQASLLKAAKAARLEKLEIPTKIKL
LSDPWTPETGLVTAALKLKREAVRKAFFEELSKLYES
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgattccatatatagttgctatcctggttccccttataattactcttctctatcaaaaa
tcaaagaatgcaaagaaacgtggggtgcctgttgatgtcggtggggaaccgggatatgcg
attcggaacgctcaatttccaaccctcttggaaactgcatgggaaggtgtctccactctt
gctcaactttttgagatggcgtgcaagaaacatggacataaatgcttgcttggaacgagg
acattaatctcaaaggacactgaagtttctgccaatggaaggtcttttgagaagcttcat
ttgggagagtatgagtggctgacctatgggcaagtgtttgaaaaagtgtgcaattttgct
tctggcttagctcacctagggcttagaagtgaggaacgtgttgcgatatttgctgataca
agagcagagtggtttatttccttgcagggttgctttaggcgcaatgtctctgtggttacc
atctacgcatctttgggcgaggaagcactttgctattcattaaatgagacagaagttaca
gctgtgatttgtggggccaaagaactgaaaaagcttgcagaagtaagcggacagcttgaa
acagtaaaatacatcatatgtatggatgatgaaactccatcaagtgcatcatctatggcg
cagagtggtcgctggagagttgtgtcagtagctgatgtggagaaacttggacgagaaaat
ccagttgatgctgctttacctctatcagaagatgttgcagttataatgtacacaagtggg
agtactgggctgcctaagggtgtaatgatgacacatggtaatgtcctagctgtagtttct
tctgtcaggacaattgttactggccttgaagacaaggatgtttatctggcttacctacca
ttggctcatatccttgaaatagcggctgagaatgtagttgcaggtgctggaagtgctata
ggatatggaaccccaatgacactcactgatacatcaaacaagatcaaaaggggaacaaag
ggggatgctactgtcttaaggccaactgtaatggcagctgttccagcaattcttgatcgt
gttcgagatggtgtgcagaagaaggttgatgcaaagggtggccttaccaaaaaattgttt
gattttgcatatgctcgtcgaatatctgcaattaatggtagttggtttggcgctaggggc
atagaattgcttctgtggaacttcctggtgtttagaaaggttcgggcagttttgggaggt
cgcatccgctttttgctttctggtggtgctcctctttccggtgatactcaaagatttatc
aacatttgccttggggctccaatatgccaaggttatggtctcacagagacttgtgctggt
gggacattttctgagtttgatgatccatctgttggtcgagttggtaatccagtcccttgc
tcatatattaagttaatagattggcctgaaggtgggtatttaattagcaattcaccaatg
cctcgtggggaaatagttattggtggtccaaatgttacgttgggatactttaaaaatgaa
gcaaaaacaaaagaggtgtacaaggttgatgagagaggaatgaggtggttttatacaggt
gatataggacaatttcacgctgatggttgccttgagataattgaccgtaaaaaggatata
gtcaagcttcaacatggggaatatatctccttaggaaaggttgaggctgcacttgtcgtg
agcccctatgttgagaatataatgctggatgcggatccatttcatagttactgtgtagcc
cttgtagtggcggcgcaacctgctctagaagaatgggcttcaaagaagggaattgcattt
actgattttgcggagttgtgtgagaaagaagaaacaataaaagaactgcaggcatcactt
ttgaaggcagcaaaggcagcacgattggagaagcttgagatcccaacaaagatcaaattg
ctttctgatccatggactcctgaaactggcctagtcactgcagctctcaagcttaagaga
gaggccgttaggaaggctttctttgaagaactctcgaagttatatgaatcttga
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