Populus trichocarpa (black cottonwood): 7469168
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Entry
7469168 CDS
T01077
Name
(RefSeq) N-glycosylase/DNA lyase OGG1
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
7469168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7469168
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
7469168
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
7469168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
RecR_HhH
HHH
Motif
Other DBs
NCBI-GeneID:
7469168
NCBI-ProteinID:
XP_002307451
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All DBs
Position
5:complement(18682974..18691071)
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AA seq
378 aa
AA seq
DB search
MKRARPTPPPATPTTSRSSPIPPLPTPPQPRHSSKKHQKIIFKPTNWAPVNLTQSELSLP
LTFPTGQTFRWKQTGPLQYTGSLGRHLISLKHHQNGDVYYQIHHSPSQSAAKSALLSFLN
TNISLTEMWHGFAAADSRFAELAQHFKGARVLRQDPLECLIQFLCSSNNNISRITKMVDF
VSSLGDHLGNVEGFEFHAFPSLERLALVTEQQLREAGFGYRAKYVTGTVNALQSKPEGGV
KWLESLRKLQLQMVIDSLCTLPGIGLKVASCIALFSLDQHHAIPVDTHVWRIATTHLVPE
LAGASLTPKLCGRVADAFVTKYGKYAGWAQTLLFIAELPSQKALLPSVTVNEKKSSKKRG
SKAQRGPSSTEEGGQQAD
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagccagacccacgccgccacccgccacccccaccaccagcagatcatcacca
ataccacctctgccaacaccaccacaaccccgccactcctccaaaaaacaccaaaaaata
attttcaagccaacaaactgggccccagtcaacctgacccagtcagaactctcactccca
ctcacattccccaccggccaaaccttccgttggaaacaaaccggtcccctccaatacaca
ggcagtctcggtcgtcacttaatctcccttaagcaccatcaaaacggcgacgtttattac
caaatccaccattccccctcccaatccgctgccaaatcagctctcctcagtttcctcaac
accaacatctcactaaccgaaatgtggcacgggttcgccgccgctgattcgcggttcgct
gaattggcacagcattttaaaggagctagggttttgaggcaggatccacttgagtgcttg
attcaatttttatgctcttcgaataataacatttcgaggatcactaaaatggtggatttc
gtgtcctcattaggtgatcatttggggaatgttgagggttttgagttccacgcgtttcct
tccctggagagattggctttggttacggagcagcagctaagagaggctggttttggttat
agagctaaatacgttactggaacggtgaatgctttgcaatcgaaaccggaaggaggtgtg
aaatggcttgaatctcttcgaaaattacaactccaaatggtgattgattcactttgtaca
ttacctggaattggtttaaaagtggcatcctgtattgctctgttttctctcgatcaacat
catgccatccctgttgatacgcacgtgtggcggattgctacgacacaccttgtacctgag
cttgctggtgctagcctgacacctaagctctgcggccgtgtggcagatgcgtttgtgact
aagtatgggaaatatgctggatgggctcagacattacttttcattgctgaattgccctcg
cagaaggcccttctaccatcagtgactgtcaatgaaaagaaatcctctaagaaaagaggc
agcaaagcacaacgtggcccaagcagcactgaggaaggaggccagcaagcagattga
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