Populus trichocarpa (black cottonwood): 7469197
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Entry
7469197 CDS
T01077
Name
(RefSeq) small RNA degrading nuclease 5 isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
7469197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
7469197
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
RNases
7469197
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Gene cluster
GFIT
Motif
Pfam:
RNase_T
Ferritin
Motif
Other DBs
NCBI-GeneID:
7469197
NCBI-ProteinID:
XP_024457345
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All DBs
Position
5:complement(19412149..19420401)
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AA seq
574 aa
AA seq
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MGDSAERKSEVKEEKTSDCSSSSKGNKFYDIYGPDARAEVVYKTPPETSSTLNLQDVQGL
VTWVLSEGFMPSWVFIKNKPLIPKVVMLYVPGLDAALYISQSKLLAGFKECCGNPMPLLS
LSCVSDGMQTVDALLTCKMKRKRNEVDSVSRKSVLTSEQERNNSSMGNISSAGLMKDLPF
PLSYYTLTAKELEDNGYCINQPGFVSTVSAPSGSGPYDILALDCEMCITNEGFELTRVTL
VDIEGQVVLDKLVKPSNDIVDYNTRFSGITYEMLNGVTTSLKDIQEDFLKLVYKETILVG
HSLENDLLALKISHEVVIDTALLYKHPRGGNYKTALRVLSKRFLSQEIQQSGAGHDSIED
ARATMELALLKIRNGPDFGSPPSFVRRKLLTVLSECGKTSSFIDDISIVKRYTSGSSHSF
PVSSDEEALLKARKEVKNDGVHFVWTQFSELNSYFKKQAEDEGKLNGKLAEMISLLTCEK
KSTNTKGMKCSMTPQLKEILTQMDARVRCLYSTLPTNTMLIICTGHGDTAIVNRVRKMLA
EQKETAISREKIVKVLEELQAQAEVALCFVGVKN
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgggagattccgctgagcgtaaaagtgaggttaaggaggaaaaaacgagcgattgcagc
agcagcagcaaggggaataaattttacgatatctatggaccagatgccagagcggaagtt
gtttacaagacgccgccagaaacgagctcaactttgaatctgcaagacgttcaaggactt
gtaacttgggtgctttctgaaggattcatgccatcttgggtgtttatcaagaacaaacct
ctgattccaaaagtggttatgctttatgtacctggcctggatgcggctttatacatttca
cagtctaagttgcttgctggctttaaagagtgctgtgggaacccaatgccacttttatct
cttagctgtgtttccgatggaatgcagacagtagatgcacttctaacatgcaagatgaaa
agaaagagaaatgaagtagattcagtttcaaggaaatctgtcctgacttctgaacaagaa
agaaacaattctagcatgggaaatatatcatcggcaggactcatgaaagatttacctttc
ccactatcatattatacacttacagctaaagaattggaagacaatggatattgcatcaat
caaccaggttttgtttctacagtttctgcaccttcaggttctggtccctatgatatactg
gcacttgactgtgaaatgtgtatcacaaacgagggttttgagctaacaagagtaaccctg
gtggatattgaaggacaggtggtgttggataaattggttaaaccctcaaatgatattgtt
gattacaataccaggtttagtgggattacatatgagatgttgaatggggtaaccacaagt
cttaaagacattcaggaagactttctaaagctggtttacaaagagaccatcctggttggg
cattccctggagaatgatttgttagctctaaagatctctcatgaagtggtgattgatact
gcactattgtacaaacatccccggggtggaaattataaaactgctcttcgagttctttca
aagagatttctttctcaggagatacagcaatcaggggctgggcatgacagcattgaagat
gcaagagctactatggaactggcactattaaagataagaaatggacctgattttgggtct
cccccatcatttgtgcggagaaagctccttacagttttgagtgagtgtggtaaaacctcc
tcattcattgatgatatttccatagtaaagcggtacacatctggttcatcccattcattt
cctgtgtcttccgatgaggaagcacttttgaaagctagaaaggaggttaagaatgatgga
gtacactttgtctggacccaattttcagagttgaattcctatttcaagaaacaagcagag
gatgaagggaagttaaatggaaaacttgcagagatgatatcattacttacatgtgaaaag
aagtcaaccaacacaaaaggcatgaaatgcagtatgacaccccaactaaaggaaattctt
actcagatggatgctagggttcgttgcctctactccacgctaccgactaataccatgctc
ataatttgcactggacatggagatacagcaatagtgaatagggtaaggaaaatgctcgca
gagcagaaagaaactgcaatatctcgtgagaagattgtcaaggtcttggaagagctccag
gctcaagctgaagtagcgttatgttttgtgggtgtgaagaactga
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