Populus trichocarpa (black cottonwood): 7469339
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Entry
7469339 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: long chain acyl-CoA synthetase 8
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00061
Fatty acid biosynthesis
pop00071
Fatty acid degradation
pop01100
Metabolic pathways
pop01212
Fatty acid metabolism
pop04146
Peroxisome
Module
pop_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
7469339
00071 Fatty acid degradation
7469339
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
7469339
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pop01004
]
7469339
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7469339
Enzymes [BR:
pop01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
7469339
Lipid biosynthesis proteins [BR:
pop01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
7469339
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of breast milk
7469339
Exosomal proteins of breast cancer cells
7469339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
7469339
NCBI-ProteinID:
XP_002321205
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All DBs
Position
14:complement(12396881..12402088)
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AA seq
731 aa
AA seq
DB search
MADSEGSFPSSPVLDKLDSHDYSSVGKGYGTYGIVGAAAVAILIPILLSTIFMGKKKVKQ
RGVPVEVGGEAGYAVRNARHAELVEVPWKGATTMAALFEQSCRKHSQKRFLGTRKLISKE
FVTASDGRKFEKLHLGDYEWQTYGQVFDRVCNFASGLIMLGHNEDARAAIFADTRAEWLI
AFQGCFRQNITVVTMYASLGVDALIHSLNETQVSTLICDPKQLKTLAAISSKITTIKNVI
YFEDGETTNDLGLSASTSYWKVSSFSEVEKLGKNSPVPPSLPTKNGIAVVMYTSGSTGQP
KGVMITHGNIVATAAAVMMVIPKLSSNDVYLAYLPLAHVFELAAESVMLSVGCAIGYGSA
LTLTDTSNKIKKGTKGDASILNPTLMIAVPAILDRVRDGVLKKVEEKGGLAKKLFNIGCK
RRMAAIEGSWFGTSALERMLWDVIAFKQIRAILGVRMQFILCGGAPLSGDSQRFTNICMG
AIIGQAYGLTETCAGAAYTEWDDPSVGRVGPPLPCCYVKLVSWEEGGYTVADKPMPRGEV
VVGGFSVTAGYFNYQEKTNEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQH
GEYISLGKVEAALTSSDYVDNIMVHANPFHNYCVALIVPSHRILEKWAQEAGIQHQNFSE
LCNEADAVSEVEQSLSKVAKALRLDKFETPAKIKLLPDPWTPESGLVTASLKIKREQLKS
KFKDELQKLGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggctgattccgagggaagttttccgagctcacctgttctagataaattggactctcat
gattactcgtcagttgggaaaggctatggaacatatggcattgtgggtgctgctgctgtt
gctatcctcatacctatattactttctaccatcttcatgggaaagaaaaaggtgaaacag
agaggagtcccggtagaggtaggcggtgaggcaggttatgcagttcgcaatgcccggcat
gctgagctagttgaagtcccttggaaaggggcaacaaccatggcagctctatttgagcag
tcttgtagaaagcattcgcagaagcgatttcttggaacaaggaagctaattagtaaggaa
tttgttactgctagtgatggcaggaagtttgagaagctgcacctgggtgattatgaatgg
caaacctatggacaggtttttgatcgtgtttgtaactttgcatccgggcttattatgtta
gggcataatgaggatgctcgtgctgcaatttttgctgatactcgggctgagtggttgatt
gcctttcagggatgctttcggcagaacattactgttgtcactatgtatgcttctctaggt
gtggatgctttgatccattccctcaatgagactcaagtatctaccctgatctgtgatccc
aagcagttgaaaacgctagctgcaataagctcaaaaataacaactattaagaatgtcatt
tactttgaagatggagaaactacaaatgatttgggcttatctgcgagcacaagctattgg
aaggtttcatctttttctgaagttgagaaactagggaagaacagtcctgttcctccaagc
ttacctacaaagaatggaattgctgttgttatgtacacaagtggcagtacaggccagcca
aagggagtcatgattactcatggcaacattgtagccactgctgcagctgttatgatggtg
attccaaaactgagtagcaatgatgtatatttggcttatttgcccctagcccatgttttt
gaactggcagctgagtctgtaatgttgtctgtaggttgtgctattggctatggttcggca
ttgactttgacagacacatctaacaaaattaagaaaggaaccaagggtgatgcatctata
ttaaatcctactctcatgatagctgttccagccatactagatcgtgtccgggatggagtt
ctaaaaaaggttgaggagaagggagggttagcaaagaagcttttcaacattggatgtaag
cgccgaatggcagccatagaaggaagctggtttggtacttcggcactggagagaatgctg
tgggatgtcattgccttcaaacaaatacgtgctatacttggagttcgtatgcaattcatc
ctatgtggcggagcccctttatctggggattcacaacggttcaccaacatctgcatgggg
gctataattggtcaagcatatgggttgacagaaacatgtgctggagctgcttacactgag
tgggatgacccatccgtgggccgtgttggacctcctcttccatgttgctacgttaagctt
gtttcttgggaagaaggtgggtatacagtagccgacaagccaatgccccggggtgaggtt
gtagttgggggattcagcgtgactgccggttacttcaactaccaagaaaagactaatgag
gtctacaaggttgatgaaaggggcatgcgttggttctatactggcgacattgggcagttt
caccctgatggatgccttgaaattattgacaggaagaaggatatcgtcaaacttcaacat
ggagagtatatctctcttggaaaggtggaggcagcattaacatcgagtgactatgttgat
aatatcatggtacatgcaaatcccttccacaactattgtgttgccctaattgttccatca
catcgcatacttgagaagtgggcccaggaagctggcatccagcaccagaacttttctgaa
ctgtgtaacgaagccgatgctgtcagtgaggttgaacaatcactttccaaggtagcaaaa
gctttgaggttggacaagtttgaaactccagctaagatcaagttgctgccagatccatgg
acacccgagtctggcttggttactgcctccctcaagataaagagggagcagctgaagtcc
aaatttaaagatgagctccagaaactgggtgagtga
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