Populus trichocarpa (black cottonwood): 7469389
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Entry
7469389 CDS
T01077
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
pop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7469389
03083 Polycomb repressive complex
7469389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7469389
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
7469389
Histone modification proteins
HAT complexes
HATB complex
7469389
HDAC complexes
Sin3A-HDAC complex
7469389
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
7469389
PRC2.2
7469389
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
7469389
Heterochromatin formation proteins
Other heterochromatin formation proteins
7469389
Chromatin remodeling factors
NuRD complex
7469389
NuRF complex
7469389
NuRF complex (fruit fly)
7469389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_WDHD1_1st
EIF3I
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_RIG_1st
eIF2A
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
MIOS_WD40
NBCH_WD40
Beta-prop_SPT8
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
7469389
NCBI-ProteinID:
XP_002320581
UniProt:
B9IB49
LinkDB
All DBs
Position
14:13712997..13715653
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLDDAENDARHYDDDRSDFGGFGAANGKVQIIQ
QINHDGEVNRARYMPQNPFMIATKTVSAEVYVFDYSKHPSKPPLDGACTPDLRLRGHSTE
GYGLSWSKFKEGYLLSGSDDAQICLWDINTTPKNKSLDAMQIFKVHEGVVEDVAWHLRHE
HLFGSVGDDQYLLIWDLRTPSVTKPVHSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDIRKINTALHTFNCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDDEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDIPADES
TKDS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaagacgaaatgaggggagagatagaagaacgattgataaacgaagag
tacaagatatggaaaaagaacacacctttcctctacgaccttgtcatcactcatgccctc
gaatggccttctctcacagtcgaatggcttcccgatcgcgaggagcctcctggcaaggac
tactccgttcaaaagatgattcttggcactcacacctccgagaacgagcctaactatctc
atgcttgcccaggtccagcttcctcttgacgacgccgaaaacgacgcccgtcactacgat
gacgatcgctccgattttggtggatttggcgccgccaatggcaaggtgcaaataattcag
caaataaatcatgatggggaggtgaatagggcgcggtatatgccgcaaaacccattcatg
atagctaccaagactgttagtgctgaagtttatgtcttcgactacagcaagcacccatct
aagccgcctcttgatggtgcttgtactcctgatttgagattgaggggtcacagcactgaa
ggctatggtttgtcttggagtaagtttaaagaagggtatttgcttagtggttctgatgat
gctcaaatttgcttgtgggacattaacaccactcctaagaataagtctcttgatgccatg
caaatctttaaggttcatgaaggtgttgtagaagatgtagcgtggcatctgagacatgaa
catttgtttggttctgttggggatgatcaatacctgcttatatgggatctccgaactcca
tctgttactaagcctgtccattccgtagttgctcaccagagtgaggttaactgcttggct
tttaatccttttaatgaatgggttgtggcaacggggtctactgataagactgtcaagtta
tttgacatacggaagatcaatactgcacttcatacatttaactgtcacaaggaggaggtt
ttccaagtcgggtggaatccaaagaatgagactatcttagcttcttgttgccttggtaga
aggctcatggtctgggatcttagcaggattgatgatgagcagacaccagaggatgctgaa
gatggccctccagaattgcttttcattcatggtggtcacaccagtaaaatatcagatttt
tcatggaacccatgtgaagattgggttgttgctagtgtagctgaagataacatccttcaa
atatggcagatggcagagaatatctaccacgatgaagatgatataccagcagatgaatca
acaaaagattcctag
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