Populus trichocarpa (black cottonwood): 7469503
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Entry
7469503 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7469503
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7469503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7469503
03019 Messenger RNA biogenesis [BR:
pop03019
]
7469503
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
7469503
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
7469503
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Gln-synt_C-ter
Motif
Other DBs
NCBI-GeneID:
7469503
NCBI-ProteinID:
XP_024466147
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All DBs
Position
10:22131882..22136294
Genome browser
AA seq
661 aa
AA seq
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MEPFFNSRRPRHHKQKGNTAPYNQQGFSANPSLTNSMQPQLGLVNPQIPIPFNNSNTPLR
NGQAMPNMPPLINQQHGLVSGPNDLAILQLQNQVNKLNALKMLMNQVNQLQGELFGPGFS
NLPQQINQNMGLLQNPMQNMMNPVMPMQMPMTSQVGSFNVPSRSHQVVGAQSPNFFVNQQ
VKQNQPNFVMPTTGANGSKQLSFENQQMQGNLSATQKNQNFVMPAVGTNGSNSLHVATQQ
VQGISPASQQSEKFVMPTMAANGPKPLPAATQQVQGNPFTSQQSQNLQPSAYNRWQGNPA
KNGQGSTPNSKQGIFSGKNFKNNPKREQSQSGHQKSEFHRMDNGKRKLGFSNKHGGKGKG
NERAAKFGRSDPSNQVMEQKRTHIYTEQEIKQWRESRRKHFPTKTNIEKKQTEKLIDSGV
IDKEANFRRKQLKEILAKQAELGVEVAEIPPEYMLDSEKLGVEVAETPLSYLLDSEKLGV
EAAEIPPHHLLDSEKQEHGREDNRRSLTKKGRFWNKHDRRGRYKRKGRSDMQLGLENEER
KPTLLEKLLCADIKRDKHRLLQVFRFMVANSFFKDWSDKPLKFPSVVVKEDGCKDEPQEE
KPSLVGEEESEVPNNTTVEDFGDRDDGDEHDAQVEPGNGSVMGKCDIVDEVYRVEEGEII
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggaacctttcttcaattcccgtcgtcctagacatcacaaacaaaagggcaacactgct
ccttataatcaacagggattttcagcaaatccttctttaacaaattcaatgcaacctcag
ctgggtttagtcaatcctcaaatcccaattccttttaataattcaaatacccctttaaga
aatggacaagccatgcctaatatgccacctttaatcaatcaacaacatggtctagtgagt
ggacctaatgatctggctatccttcagttacaaaatcaggtcaacaagttgaatgcttta
aagatgttgatgaatcaagtaaatcaattgcaaggagagctgtttggtcctggtttctcc
aatttgcctcaacaaatcaatcaaaatatgggtttgttgcaaaatccaatgcagaatatg
atgaaccctgttatgcctatgcaaatgccaatgacttctcaagttggttcctttaatgtc
ccttccagaagtcaccaagtggtaggtgctcaaagtccaaacttttttgtaaatcaacaa
gttaagcagaaccagccaaactttgtaatgccgacaactggtgcaaatggatcgaaacaa
ttgtcttttgaaaatcagcaaatgcaagggaacttgtctgcaacacagaaaaatcagaac
tttgtaatgcctgcggtgggtacaaatgggtcaaattcattgcatgttgcaactcagcaa
gtgcaagggatctcgccagcatcacaacaaagtgagaaatttgtaatgcctacaatggct
gcaaatggaccaaagcctttgccagctgcaactcagcaagtgcaagggaacccatttaca
tctcagcaaagtcagaacttgcaaccctctgcttacaataggtggcagggcaatcctgct
aaaaatggccagggtagtactccaaattccaaacaaggaatcttttctggaaaaaacttc
aaaaataatccaaagagagagcaatcacaatcaggacatcagaaatccgagttccatcgc
atggataatggaaagagaaagcttgggttttctaataaacacggtggaaaagggaaaggc
aatgagagggcagcaaaatttggtcgctctgatccttcaaaccaagttatggaacagaaa
agaactcatatatacacggaacaagaaatcaaacaatggcgtgaatcacgtaggaagcac
ttcccaacaaaaaccaacatagagaagaagcagactgaaaagctaatagactctggggtc
attgataaagaggccaactttcgtcgcaagcaactcaaggagattttggcaaagcaggct
gagctaggagttgaagttgctgaaataccaccagaatacatgttagattcggagaagtta
ggagttgaagttgcagaaacaccactgagctatctgttagattcagagaagctaggagtt
gaagctgcagaaataccaccgcaccatctgttagattcagagaaacaagagcatggaagg
gaagataacagaaggtccttgactaagaaggggagattctggaacaagcatgatagaaga
ggaagatataagagaaaaggtcggtcagacatgcagcttggattagaaaacgaggagagg
aagccaacgctgttggagaagcttctttgtgcagatataaagagggataagcaccggttg
ttgcaggtttttaggttcatggtggcgaactctttcttcaaggattggtcagataagcct
ttgaagtttccttcggtagtggttaaagaagatggttgcaaggatgagccacaggaagaa
aaaccttcacttgttggggaagaagagtctgaagttccgaacaatacaacagttgaagat
tttggtgatagagatgatggcgacgaacatgatgctcaagtggagccagggaatggttct
gtcatgggaaaatgtgatattgttgacgaagtttatagggttgaagaaggagaaatcatt
gactaa
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