Populus trichocarpa (black cottonwood): 7469506
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Entry
7469506 CDS
T01077
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7469506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7469506
03012 Translation factors [BR:
pop03012
]
7469506
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
7469506
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
7469506
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
7469506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
T2SSE
AAA_19
PhoH
AAA_16
Myosin_head
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
7469506
NCBI-ProteinID:
XP_024465591
LinkDB
All DBs
Position
10:22101171..22110337
Genome browser
AA seq
1155 aa
AA seq
DB search
MQNSKLMLRSFLLGSCCTSTKKKSVSNTIFSNKKNNHLFGLPLFLLNSNETSFLVAKRRG
FCGYAVEQFSDDEYECDFESHKASSSVANVDEWKWKLSLLLRSETDQEIVSKDRKDRRDY
EQISNLTRRMGLYSELYGKVVVASKVPLPNYRSDLDDKRPQREVVIPLSLQRRVEGLLQE
HLDRAQLKAENVGGSADDAKSINQTGDISLDENKDSFLDRSVMERVLQRRSLRMRNMQRA
WQESPEGRKMMDFRKSLPAFKEKERLLQAIAKNQVIVISGETGCGKTTQLPQYILESEIE
SGRGAFCSIICTQPRRISAMSVADRVSAERGEPLGEAVGYKVRLEGVKGKNTHLLFCTSG
ILLRRLLSDHNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRQDLRLILMSATLNAEL
FSNYFGGAPAIHIPGFTYPVRTQFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLVPR
KRKNQITTLVEDALNKSSFENYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGAVL
VFMTGWEDISSLRDQLKAHPLLGDPNRVLLVTCHGSMATSEQKLIFEKPPPNVRKIVLAT
NMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRKGRAGRVQPGEC
YHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPESLAVQNAI
GFLKMIGALDEKENLTNLGKYLTMLPVDPKLGKMLIMGAIFHCFDPVLTIVSGLSVRDPF
LLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKEAEREGSAYEYCWRNFLSAQTLQA
IHSLRKQFNFILKDTGLVEEDASNNNKLSHNQSLVRAIICSGLYPGIASVVHRETSMSFK
TMDDGQVFLYANSVNARYETIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALACG
VQAGHLKMLDGYIDFFMDHNLAECFLKLKEELDKLLQKKLQDPNLDILKEGKYLMLAVQE
LVSGDQCEGRFVFGRESRKPKIINDNDRFTEDGANPKSLLQTLLMRSGHSPPKYKTKHLK
TNEFRALVEFKGMQFVGKPKRNKQLAEGDAAIEALAWLTHTSNNNQNEHDDSQPDVTDNM
LKVLGKRRRSKRHSG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattcaaagctaatgctaagaagtttccttctgggatcttgctgcacctccacc
aagaagaagtcagtttccaataccatcttcagcaataaaaaaaacaaccatttatttggt
ttgcctttgtttctcctgaattctaatgaaaccagctttttagtcgccaaaaggcgtggt
ttttgcgggtatgcagtagagcagttctctgatgatgagtatgagtgtgattttgaaagc
cacaaggcttcttcgtcggtggccaatgttgatgaatggaaatggaaactcagtttgcta
ttgcgtagtgaaacagaccaagagattgtttctaaagatagaaaagacaggagggactat
gagcagatatcaaatcttactagaagaatgggactttatagtgaactgtatggaaaagtg
gtggttgcaagcaaggttcctctacctaactacaggtctgatttggatgataagcggcca
caaagggaggtggttatcccactaagtttgcaaaggagggttgagggtttacttcaggag
catcttgatagagctcaattaaaggctgaaaatgttggtggtagtgcagatgatgccaag
tccatcaatcagactggagatataagtttagatgagaataaggattctttcctagaccgt
tctgtgatggaaagggttcttcagaggaggagtttgcggatgcgtaacatgcaaagagct
tggcaggaatcacctgagggcagaaaaatgatggacttcaggaaatctctaccggctttc
aaggaaaaggagaggttactccaagcaatagcaaagaatcaggtcatagtaatatctgga
gagactggatgtggtaaaaccactcaactccctcaatatattctggagtcggaaatagaa
tctgggcgtggagcattctgtagcataatttgcactcagcctcgaagaatatctgctatg
tctgttgcagatagagtgtctgcagagagaggagagcctcttggtgaagcagttggttat
aaagttcgactagagggtgtgaaaggaaaaaacacccatctgcttttttgtaccagtgga
attttactccgacgcctgttaagtgaccacaacttgaacggcataacccatgtttttgtt
gatgaaattcatgagcgaggcatgaatgaagacttcctattgattgtgctcaaggatctt
cttccacgtcgtcaagacttgagattgattttaatgagtgctactttgaatgcggaactc
ttttccaattattttggaggagcacctgctattcatattccgggctttacatatccagtg
aggacacaatttttagaagatgtactagaaatgactggatataagttgacttctttcaat
caaattgatgattatggccaagagaaaatgtggaaaacacagaggcagctggtaccgcgg
aaaaggaaaaaccagatcaccactcttgttgaggatgctcttaataaatcaagttttgag
aattatagttccagagcacgtgactctctggcatgctggatgcctgattgcataggattt
aaccttattgaagcagttttgtgccatatatgtcggaaggaaagaccaggtgctgtctta
gtgttcatgactggttgggaggatattagctctttgagggatcaacttaaagctcatcct
cttcttggtgatcctaacagagttctgcttgtaacttgccatggttctatggcaacctct
gaacagaaactgatatttgagaaacctcctcctaatgtacgtaaaatagttcttgcaaca
aacatggcagaggcaagtattacaatcaatgatatagtttttgttgtggattgtgggaaa
gcaaaagagaccacttacgatgctttaaacaatacgccctgcctgctaccttcttggata
tcaaaagcatctgcacgacaaagaaagggtagggctggccgagtgcagccaggcgaatgt
taccacctatacccgagatgtgtatatgaagcttttgctgaatatcaacttcctgaactt
ttgaggactcccctgaactctctttgcttgcaaataaagagtttgcaggttggaagcata
ggggaattcttgtcagctgctctccagccaccagaatcattggctgttcaaaatgccatt
ggttttctgaagatgattggagcattggatgagaaggagaatctgacaaatcttgggaag
tatttgacaatgcttccagtagatcccaagctgggtaaaatgttaataatgggtgctatc
tttcattgctttgatcctgtgttaacaatagtgtccgggctcagtgtcagggatcctttc
cttctgccgcaggacaaaaaggatttagctgggacagcaaaatctagattttctgcaaaa
gactacagtgatcatatggctcttgtccgtgcatatgaaggatggaaagaagctgaaaga
gaagggtcagcatatgagtattgctggagaaatttcctatctgcacaaactttgcaggcc
atccattctctgaggaagcagtttaacttcattttaaaagataccggcttggtagaagaa
gatgcaagcaacaacaacaaattaagtcacaaccaatcattggttcgtgcaattatatgc
tctggcctctatcctggaattgcatcagtggtgcatagagaaacatccatgtctttcaaa
acaatggacgatggccaagtttttctatatgctaattctgtgaatgcacgttatgaaaca
attccttatccatggctggtctttggtgaaaaagtaaaggtcaacacagttttcatacgt
gattccactggtgtatctgattcaatactgatcctttttggtggtgcccttgcttgtggg
gtacaggctggacatctgaaaatgttggatggatatattgatttcttcatggatcataat
ttggcagagtgcttcttgaagcttaaagaagaacttgataagctccttcagaagaagctt
caagatcctaaccttgacatactcaaggaaggaaaatacctcatgcttgctgttcaagag
ctggtatcaggagatcaatgtgaaggaagatttgtatttggtcgcgaaagcaggaagcct
aagataattaatgataatgacagatttacagaagatggagcaaatccgaaaagtttgcta
caaacactactgatgagatctggacactcccccccaaaatacaagacaaagcaccttaag
acaaatgagtttagggcactggtcgaattcaagggaatgcagtttgttgggaaacccaag
agaaacaagcaactagcagagggggatgctgctattgaggcactggcctggttaactcac
acttccaacaacaatcaaaacgagcatgacgattcccaacctgatgtcactgacaacatg
ctgaaagttctcggaaaacgtcgtagatcaaagcgtcactctggttga
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integrated database retrieval system
