Populus trichocarpa (black cottonwood): 7469793
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Entry
7469793 CDS
T01077
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
7469793
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
7469793
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
7469793
NCBI-ProteinID:
XP_052311014
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Position
8:2847397..2849313
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AA seq
327 aa
AA seq
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MATLPYADVDSSLRAMAGRAEGFGRFSIGGLHDPLYSVTTLADDGPGSLREGCRRQEPLW
IVFEVSGTINLVSQLSVSSYKTIDGRGQRIKVAGKGLRLKECEHVIVCNLEFEGGRGHDI
DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADASHVG
DRCIRVTIHHCFFNGTRQRHPRLRYGKVHLYNNYTRNWGIYAVCASVEAQIYSQCNIYEA
GQKKKTFEFYTEKAADRQGASSGLIRSEGDVLLNGAQSCLLQGVGENCVFHPGEYYPTWT
LESPLDSLKDVLQICTGWQSIPRPAGM
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggccacgctgccttacgctgacgtggattccagcttgagagccatggccggtcgagca
gaagggtttggccggttctccatcggtggcctccacgatcctctctactctgtcaccacc
ttggctgatgatgggccaggatcactacgtgagggttgcaggagacaagaaccattgtgg
attgttttcgaggtttctggtacaattaatcttgtgtcacaattaagcgtgtcatcttat
aaaacaatagatggcagaggtcaaagaattaaggttgcaggaaaaggattaagattgaaa
gaatgtgaacacgtaattgtctgtaaccttgaatttgaaggtggtagaggacatgatatt
gatggcatccaaataaagcctaattctagacatatttggattgatcgatgtagtcttcgt
gattatgatgatggtcttattgatattaccagacaaagcactgatatcactgtttcaagg
tgttattttgcacaacatgacaagacaatgctgattggagcagatgcatctcatgttggt
gatagatgcataagagtgacaattcatcattgtttttttaatggaacaaggcaaagacat
ccgcgtcttagatacgggaaagttcatttgtacaacaactatacaaggaattggggaatt
tatgctgtttgtgcaagtgtagaagcccagatatattctcaatgcaatatatatgaagca
ggacagaagaaaaagacttttgaattttacacagaaaaggcagcagacagacaaggggct
agttctggtttaataagatctgaaggagatgtattgctgaatggagctcaatcatgctta
ttacaaggtgtaggagaaaactgtgtgttccatccaggtgaatattatccaacttggacc
ctggagtcccccttggattctctgaaagatgtcctccaaatctgcactggttggcaatct
attcctcgaccagcagggatgtag
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