KEGG   Populus trichocarpa (black cottonwood): 7469837
Entry
7469837           CDS       T01077                                 
Name
(RefSeq) cell division cycle 5-like protein
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7469837
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7469837
   03400 DNA repair and recombination proteins [BR:pop03400]
    7469837
Spliceosome [BR:pop03041]
 Complex B
  Other components
   Prp19 complex
    7469837
 Complex C
   Prp19-CDC5 complex
    7469837
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    7469837
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6 TPR_HPS5_insect C45G9_C
Other DBs
NCBI-GeneID: 7469837
NCBI-ProteinID: XP_002325806
UniProt: B9IPH8
LinkDB
Position
19:3030920..3038106
AA seq 1019 aa
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT
EWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYDPGDDPR
KLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARR
LASLQKRRELKAAGIDNRHRKRKRKGIDYNSEIPFEKRPPPGFYDVADEDRPVEQPKFPT
TIEELEGKKRMDIEAQLRKQDMAKNKIAERQDAPSAILQANKLNDPETVRKRSKLMLPAP
QISDHELEDIAKMGYASDLLAGSEELTEGSGATRALLANYAQTPRQGMTPLRTPQRTPAG
KGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKREIQTPNPMLTPSATPGG
VALTPRIGMTPSRDSFGMTPKGTPIRDELHINEDMDMHDSAKLEQRRQADLRRNLISGLG
NLPQPKNEYQIVIQPPPEENEEPEEKIEEDMSDRIARAKAEEEARQQALLRKRSKVLQRE
LPRPPAASLELIRDSLLRADGDKSSFVPPTSIEQADEMIRKELLALLEHDNAKYPLEEKP
SKEKKKGSKHPSNRSSASIPVIEDFEEDELKQADNLIKVEAQYIRVAMGHEDESLDEFIE
AHKTCINDLMYFPTRNAYGLSSVAGNMEKLTALQNEFENVKTRLEAEREKALRLEKKVNV
LTQGYQMRAERQLLPPIELTLKQMDTSGTELECFQALQRQEQLAASHRINGLWEEVQKQK
ELEQTMQRRYGDLVAELERIQQLIINYRALAIQQEEIAAKNRALELAEAATKQAAILNSE
PFEPVTPDEHGNSMPVGSFDKKVLEQQMDVDSEKVHSALATDTSLTNNVPSDEGQMTLVQ
GNGHEASGANPSSPDGNNQNGVPVLTENSINRGDIISTVGVAVEIKVNDASVDGDAGDVM
STEIMDGLASVEGESIQERADDFDKADMMEVSSGGDDKVNQKKDEGKLPVIYVDLTNSD
NT seq 3060 nt   +upstreamnt  +downstreamnt
atgaggatcatgataaagggtggagtgtggaagaacacggaggatgaaatactaaaagcg
gcggttatgaaatatggaaagaatcagtgggctcgtatttcttctcttcttgttcgtaaa
tctgctaagcaatgtaaagctcgttggtatgagtggcttgacccttccattaaaaagact
gagtggactagagaggaggatgagaaattactacatcttgctaagctcatgcccactcag
tggaggacgattgcacctattgttggacggactccatcgcagtgccttgagcgttacgag
aagctgcttgatgcagcttgtgttaaggatgacaactatgatcctggtgatgatccacgg
aaattgcgccctggtgagattgatccaaatccggaatctaagcctgcacgtccagatcct
gttgatatggatgaggatgagaaggaaatgctctcggaagcacgagctaggttagcaaat
actaaaggtaaaaaggctaaaagaaaggctagggagaaacagcttgaagaagctaggagg
cttgcttccttgcagaaaaggagggaactgaaggctgctggtattgataataggcatcga
aagaggaaaagaaagggtatagactataattctgaaatcccctttgagaaaagacctcct
cctggattttatgacgttgctgatgaagatagacctgtggaacaacctaagttcccaacc
accattgaagaacttgaggggaaaaaaaggatggacatcgaagcacagttaagaaagcaa
gacatggcaaagaataaaattgctgaaaggcaagatgccccatcagctatactgcaagca
aacaagctgaatgatccggaaacagtaaggaagaggtcaaaattgatgcttcctgcacca
cagatttcagatcatgaattggaggatattgcaaagatggggtatgctagtgatcttctt
gcaggaagtgaggaactcacagaagggagcggtgcaacacgtgctcttttagcaaactat
gcccaaacaccacgccaaggaatgacaccgctacgaacccctcaaagaactcctgctggc
aagggtgatgctataatgatggaagctgaaaacctagcacggttgagggagtcgcaaaca
ccattgctagggggagagaatccagagttgcacccttcagatttttctggtgttactcct
aagaaacgggagattcaaacaccaaacccaatgctgactccttctgcaactcctggcggt
gttgctcttacgcccagaattggtatgacaccgtcaagggattcttttgggatgacccca
aaaggaactcccatcagggatgaactccatataaatgaagatatggatatgcatgatagt
gcaaaacttgagcaacgaagacaggctgatctgagaaggaatttgatttctggtcttggt
aatcttccacagccgaagaatgaataccagatagtcattcaaccgcctcctgaggaaaat
gaagaaccagaagagaagattgaagaggatatgtctgatagaatagccagggcaaaagct
gaggaagaagctcggcagcaggcattacttcggaagagatcaaaagtactgcagagggaa
ctccctcggcctcctgctgcttctttggaattaattagagattctttgctgagagctgat
ggggataagagttcctttgttcctcctacatcaattgaacaggctgatgaaatgataagg
aaggagcttctagccttactagaacatgataatgcaaagtatccacttgaagagaagcca
agcaaggagaaaaagaaaggctccaagcacccttcaaacagatcttctgcttctatccct
gtgatagaggactttgaagaagatgagctgaaacaagctgataatttgataaaagtggaa
gctcagtacatacgtgtagctatgggccatgaagatgaatcccttgatgaatttattgaa
gcacacaaaacatgtataaatgacctcatgtacttccccactcgcaacgcttatggtctc
tccagtgttgctggaaatatggagaaactcacagcattgcagaatgaatttgagaatgtg
aaaacaaggttagaggctgaaagggagaaggcattacggctcgagaagaaggttaatgtt
ctcacacaaggttatcagatgcgggcagaaaggcagcttttgccaccaattgagttgacc
ttaaagcagatggacacctctggaacagaactagagtgcttccaagctttgcagaggcaa
gagcaattagcagcatcacacaggatcaatggtctttgggaggaagttcagaagcaaaag
gagctagagcaaactatgcaaaggagatatggggatcttgtggctgagctggaaaggata
caacagctcatcattaattacagagcactagcaatacaacaagaagaaattgctgcaaag
aatcgtgcacttgagttggcagaagctgcaacaaagcaagctgccatactgaactctgaa
ccttttgaacctgtgactccagatgaacatggaaattctatgccagttggttcatttgac
aagaaagttttagagcagcaaatggatgttgattcagagaaggtgcacagtgcactggcc
acggatacaagcttaaccaataatgtgccttctgatgaggggcagatgacacttgtacaa
ggtaatggccatgaagcttctggtgctaatccctcgagtccagatggaaataaccaaaat
ggagttccagttctgacagagaactcaataaacagaggagatattatatctactgttggt
gttgcagtggagattaaggtgaatgatgcttctgttgatggggatgctggtgatgttatg
agcacagaaattatggatggcttagcttctgttgaaggagagagtatccaagaaagagct
gatgactttgacaaagctgatatgatggaggtttccagtggcggggatgataaagtaaat
caaaagaaggatgagggaaaattgcctgtcatttatgtggatcttactaactctgattag

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