Populus trichocarpa (black cottonwood): 7469871
Help
Entry
7469871 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7469871 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7469871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7469871
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7469871
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
7469871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF5646
CDI_toxin_EC869_like
DUF4407
Motif
Other DBs
NCBI-GeneID:
7469871
NCBI-ProteinID:
XP_024447159
LinkDB
All DBs
Position
19:4567157..4580627
Genome browser
AA seq
902 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKTIEKEMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDAFEAEIEGLTVKKGKTRPPRLTHLEASITRHKL
HIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDNLES
LEDLVIIGPPGLVKGAPVPVLKTSLAITAPQAPQTPATVSSPPHQSVVGQEQADDTASQD
SNSDIVARTPAKSGMVGSSAASTPTGNHAPISVNVQVQTLPSLLAVSPTLPGSSSVRGVL
ENAAPANPSHVTLTNAANSAKDEEIAGFPGHRSSSPSLVDTGLARGIGRGGLSSQPSSSI
SLSPGVIPSNGALGSVPSASDIAKRNVLGTDDRLGSGGMVQPSVSPLSNRMMLPHASKAS
DGTGAVDSSNAGDAATLSGRVFSPLVTGMQWRPGSSFQSQNEPGQFRARTEIAPDQREKF
LQRLQQVQQQGHSNILGMPPLASGNHKQFPTQQNPLLQQFNSQSSSISQGSLGIGVQAAG
FNTATSAALQQPNSIHQQANQQVVMSSGAKDAEVGHPSVEEQQLKQNLPEDSTTESAPTS
GLGKSLVNEDELTASYAMDTSLQAGASGSLTESVQVPRDIDLSPGQPLQSSQPSSSLGVI
GRRSVSDLGAIGDNINGSAINAGAMHNQSYNFEMLDAAYHKLPQPKDSERARSYIPRHPA
ATPPSYPQVQAPMASNPAFWERLSMDSVGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRY
HRKYNTWFQRHEEPKVTTDEYEQGTYVYFDFHVGNEDKQGWCQRIKTEFTFQYNYLEDEL
SV
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagtcgcaagctacaaggcgagatcgatcgcgttctcaagaaagttcaagaa
ggcgtcgacgtttttgacagtatctggaacaaggtttatgacacagataatgcgaatcaa
aaggagaagtttgaggcagacttgaagaaggaaatcaagaaactgcagagatatagggac
caaatcaagacatggattcaatccagtgagatcaaggataagaaggttagtgcatcgtac
gagcaggctctggtggatgctcgtaagactattgagaaagaaatggaaagatttaagata
tgcgagaaggaaacaaagacaaaagcattttccaaagaaggtttgggccaacaacccaaa
actgatccaaaggagaaagctaaatcagaaacaagggattggttgaataatgtggttggg
gaactggaatctcagattgatgcctttgaagctgagattgaggggctcactgtcaagaaa
ggaaagacaaggccacccagactgacacatttagaggcatccatcacacggcacaaactt
catataaagaaattagagttgatcttgaggctactagacaatgatgaattgagtcctgag
caggttaatgatgttaaagacttcctggatgactatgtggaacgtaatcaggaagatttt
gatgattttagtgatgttgatgagctgtacaactcattaccattagacaacttggagtct
cttgaagacctggttataattggtcctcctggtcttgtgaagggtgctcctgttccagta
ttaaagacttctttggcaataacggctcctcaggctcctcaaacacctgccactgtttct
tctccgcctcatcagagtgttgttggtcaagagcaagccgatgatactgcttcacaagat
agtaattctgatattgttgctagaactcctgccaaaagtggtatggttggttcttcagct
gcatcaacaccaactgggaaccatgcacctatttctgtgaatgttcaggttcagacattg
cctagtctgttagcagtttctccaactcttcctggttcatcttctgttcgaggtgtcttg
gaaaatgctgctcctgctaatccttctcatgtaaccctgaccaatgctgccaattctgca
aaggatgaagaaattgcaggcttccctggccatagatcatcatcaccttctcttgttgat
actggactagcaaggggcattggtagaggtggcctctctagccagccctcatctagtatc
tccctcagtcctggtgtaattcctagcaatggagctcttggttcagtaccttcagcttct
gacattgcaaagagaaatgttttgggaactgacgatagacttgggagtggtggaatggtg
cagccctcggtgtctccactaagtaacagaatgatgttgcctcatgctagcaaggcaagt
gatggaactggtgcagttgattctagtaatgctggtgatgctgctactctgagtggcaga
gttttctctcctttggtcactggcatgcaatggagacctggaagttcctttcaaagtcag
aatgaaccgggccaatttcgtgcaagaactgaaatagctcctgatcagagagagaaattc
ttacagcgtcttcagcaagtccagcaacaaggtcacagtaacattcttggcatgccacct
cttgccagtgggaatcataagcagtttcccacccaacaaaacccacttttgcagcagttt
aattctcaaagttcatccatctctcaaggtagtttgggaattggagttcaggcagcaggt
ttcaatactgctacatctgctgccttacagcagcctaattccatccatcagcaggctaat
cagcaagttgtgatgtctagcggtgcgaaagatgcagaggttggccatccgtcagttgag
gagcagcagctaaagcagaatttacctgaggattcaaccactgaatctgcccctacatct
gggcttggcaaaagtcttgtgaatgaggacgaactcacagcttcatatgcaatggatact
tctctgcaggctggagcatctggttccttgacagagtctgtacaagtgccaagagatata
gatctctctccagggcaacccctacaatccagtcaaccatctagcagcctaggtgttatt
ggccggagaagcgtctccgaccttggtgccattggtgataatatcaatggttctgctata
aatgctggggcaatgcataatcagtcatacaattttgagatgcttgatgctgcatatcac
aagcttcctcaaccgaaagactcagaacgagctaggagctatattccgaggcaccctgca
gcaacaccccctagctatcctcaagttcaggcaccaatggcaagtaatcctgcattctgg
gaacggttaagcatggatagtgttggcactgacaccttgttctttgctttttactatcaa
cagaatacatatcagcaatatctggctgcaaaagaactgaagaagcaatcttggagatac
cacagaaaatacaacacctggtttcaacggcatgaggagccaaaagttactactgatgaa
tatgaacaggggacgtatgtgtattttgatttccatgttggcaatgaggacaaacaagga
tggtgccaaagaatcaagacagagttcacttttcagtataactatcttgaagatgaactc
agtgtctag
DBGET
integrated database retrieval system
