Populus trichocarpa (black cottonwood): 7469919
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Entry
7469919 CDS
T01077
Name
(RefSeq) ubiquitin C-terminal hydrolase 12 isoform X4
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
7469919
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7469919
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7469919
Enzymes [BR:
pop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
7469919
Peptidases and inhibitors [BR:
pop01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
7469919
Ubiquitin system [BR:
pop04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
7469919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
USP7_C2
UCH
MATH_2
MATH
UCH_1
ubiquitin
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
7469919
NCBI-ProteinID:
XP_002322753
UniProt:
B9IIF3
LinkDB
All DBs
Position
16:4482260..4493966
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AA seq
1114 aa
AA seq
DB search
MTMMTPSPLDQEDEEMLVPHSDLVEGPQPMEVAQVEQTSTVENQPVEDPPSMKFTWTIEN
FTRLNTKKHYSDIFIVGSYKWRVLIFPKGNNVDHLSMYLDVADSTALPYGWSRYAQFSLA
VVNQIHNKYSIRKDTQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVVIEAEVAVCK
VLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHISYFRKAVYHMPTTENDMPTGSIP
LALQSLFFKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVE
GTIQQLFEGHHMNYIECINVEYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDN
KYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDREN
GKYLSPESDRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWFKFDDERVTKEDVKR
ALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLR
IRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRNFRIQKQ
TQFSLFKEEVAKELGIPVQFQRFWIWAKRQNHTYRPNRPLTPQEEAQSVGQLREVSNKTH
NAELKLFLEVELGLDLRPIAPPEKTKEDILLFIKLYDPEKQELRYVGRLFVKNSSKPIEI
LAKLNQMAGFASEEEIELYEEIKFEPCVMCEHLDKRASFRTSQIEDGDIICFQKSPPENE
GDCRNPDVPSYLEYVHNRQIVHFRSLEKAKEDDFCLELSKLHTYDDVVERVARQIGLDDP
SKIRLTSHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNL
KVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFP
PNEKIENINDQYWTLRAEEIPEEEKNLGPQDRLIHVYHFTKESGQNQMQVQNFGEPFFLA
IHEGETLAEVKMRIQKKLQVPDEEFAKWKFAFLSLGRPEYLQDSDVVFTRFQRRDVYGAW
EQYLGLEHSDNTPKRSYAVNQNRHTFEKPVKIYN
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgactatgatgactccttcaccgttagaccaagaagacgaggagatgctcgtaccgcat
tcagatttagttgaaggtcctcagccaatggaagtggcacaagtggagcaaactagtacc
gtggagaatcagcctgtggaggatcctccatcgatgaaatttacttggactattgagaat
tttactaggttgaacacgaagaagcattattctgatatatttattgttggcagttacaaa
tggagagtactgatattccctaaaggaaacaacgtggaccacctgtcgatgtatttggat
gttgcagattcgacagctttgccatatggatggagtagatatgcgcaattcagtttggct
gtggtcaatcaaattcataacaaatactcgattagaaaggacacacaacatcagttcaat
gcaagagagagtgactggggctttacatctttcatgcctctgagtgaactttatgatcct
agcagaggatacttagtgaatgatacagttgttattgaagctgaagttgctgtttgcaag
gttttagattattggtcctatgactcaaagaaggagacgggctatgtaggactgaaaaac
caaggagcaacatgttacatgaactctctcctacagactctataccatatttcctacttc
cgaaaggcggtgtaccacatgccaacaactgagaatgacatgcctacaggaagcattcca
ttggccctgcagagtttattctttaagcttcaatataatgataccagtgttgcaacaaag
gaactgaccaaatcttttggctgggatacgtatgattccttcatgcaacatgacgtgcaa
gagcttaacagggtcctgtgtgagaagctagaggataaaatgaaggggactgttgtggag
ggcactatacagcagttgtttgagggtcaccatatgaactacattgagtgcatcaatgtg
gaatacaaatctacaagaaaggagtcattttatgatcttcagcttgatgtgaaaggttgt
cgagatgtttatgcttcttttgacaaatatgtggaagttgaacgacttgagggtgataac
aaatatcatgccgaagaacatggtttgcaggatgcaaagaagggtgtcttatttatcgac
ttcccccctgttcttcaactccaattaaagcggtttgaatatgattttatgcgcgatact
atggtgaagattaatgatcgctatgaatttcctcttcaacttgacctggacagggagaat
gggaaatatttatcacctgaatctgacaggagtgtgcgaaatctatacacacttcacagt
gttttggttcacagtggaggtgtgcatggtggacattattatgcttttatcaggcctacc
ctctctgatcaatggttcaaatttgatgatgaacgcgtgacaaaggaagatgtgaagagg
gccttagaagaacagtatggtggtgaggaagagctacctcagaccaatcctggctttaac
aatactccatttaaattcacaaaatactcaaatgcatacatgcttgtgtatatacgggaa
agtgacaaggacaagataatttgtaatgttgatgagaaagacattgctgaacacttgagg
ataaggctgaagaaagaacaagaagaaaaggaagacaagagaagatataaagcacaagct
cacctttacacaattataaaggttgcgcgagatgaggaccttaaagagcaaattggaaag
gatatttattttgaccttgtggatcatgacaaagtccgtaacttccgtattcagaaacag
acgcagtttagtctgtttaaggaggaggttgctaaagagcttggtataccagtacaattt
cagagattttggatatgggcaaagcgccaaaaccacacatatagacccaatcggccattg
actccccaggaggaagcacaatcagttggacaactgagagaggtgtcaaataagacacat
aatgctgaattaaagttgttcttggaagttgagcttgggctggatttacgtcccattgct
ccacctgaaaaaactaaagaagatattctgcttttcatcaagctttatgaccctgaaaaa
caagaattacgatatgttggtaggctttttgtgaagaattctagtaaaccgatagaaatt
ctagcaaagcttaatcaaatggctggctttgcgtctgaggaagagattgaactttatgag
gaaatcaagtttgagccttgtgtcatgtgtgaacaccttgataagagagcctcatttcga
acaagtcagattgaagatggggacataatatgctttcagaaatctcctcctgaaaatgaa
ggagactgtcgaaatccagatgtgccttcatatttggaatatgtgcacaatcggcagata
gttcatttccgatctctagagaaggcaaaagaggatgatttttgtctagagttgtcaaaa
ttacacacttatgatgatgttgtcgaaagagtagctcgccagattggtttggacgatcca
tccaaaatcaggttaacatcccacaactgctactctcagcagcctaagccacagccaatt
aaatatcgaggagtggagcatctatcagatatgttagttcactacaatcagacttccgat
atcttgtattatgaagttctagatattcctcttccagagttgcaaggtctaaaaaatttg
aaagttgctttccatcacgctaccaaagatgaagtggtaattcataacattagattgcct
aaacaaagcaccgtgggggatgtaattaatgaacttaaaactaaggtagaattgtctcac
ccaaatgctgaacttcgactgcttgaagtattttatcacaagatttataagatctttcca
cccaatgaaaaaattgagaatataaatgaccagtattggacgctgcgggcagaggagatt
cccgaggaagaaaaaaatcttggtccccaagatcgcctgattcacgtttatcacttcacg
aaagagtctggacagaatcaaatgcaagtacagaattttggtgaaccctttttcttggcc
atccatgaaggtgaaaccttagccgaagttaaaatgcgtatacaaaagaagctgcaggtt
cctgatgaggagtttgctaagtggaaatttgcatttctgtcactgggtcgtccagagtac
ttgcaggattctgatgttgtgttcacccgctttcagagaagagatgtatatggtgcttgg
gagcagtaccttgggttggagcactccgataatactcctaaaaggtcttatgcagtaaat
cagaaccgtcacacatttgagaagcctgttaaaatatacaattag
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