Populus trichocarpa (black cottonwood): 7469940
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Entry
7469940 CDS
T01077
Name
(RefSeq) cell division cycle 20.2, cofactor of APC complex isoform X1
KO
K03363
cell division cycle 20, cofactor of APC complex
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7469940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7469940
03036 Chromosome and associated proteins [BR:
pop03036
]
7469940
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Target recognizing subunit
7469940
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid separation proteins
APC/C complex
7469940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
EIF3I
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
Ge1_WD40
eIF2A
RMC1_N
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
CFAP43_N
Beta-prop_RIG_1st
Beta-prop_IFT122_1st
Beta-prop_VPS8
KNTC1_N
DPPIV_N
Beta-prop_IFT80_2nd
Motif
Other DBs
NCBI-GeneID:
7469940
NCBI-ProteinID:
XP_002323378
UniProt:
B9IIJ8
LinkDB
All DBs
Position
16:complement(4883207..4891834)
Genome browser
AA seq
448 aa
AA seq
DB search
MDSSSSSTTTRMFHPRSALRENPQRKKSYENLDRFIPNRSAMDMDFAHYMLTEGRKAKES
PPSQSLYQKLLAEAFNMNGRRILAFKNKPPTLVDPIPLFSSSSVHSSKPVKPQRHIPQRP
EMTLDAPDIVDDFYLNLLDWGNNNVLAIALGTTVYLWNASNSSISEVVTVDEEDGPVTSI
SWAPDGRHLAVGLDNSNVQLWDSATNQMLRTLRGGHRLRVTSLAWNHHLLTTGGKDAKVI
NNDVRIREHIVESYEGHRQEVCGLKWSASGQQLASGGNDNLLFIWDRFMASSNSPRHWLH
KLEDHTAAVKALAWCPFQSNLLASGGGGNDRHIKFWNTQTGTCLNSVDTGSQVCALQWNK
HERELLSSHGFTENQLILWKYPSMVKMAELSGHTSPVLFMTQSPDGYTVASAAGDETLRF
WNVFGNPKAAKPAPKAIAEPFANVSHFR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggattcttcttcttcttcgaccacaactagaatgtttcatcctcgaagcgcacttcga
gaaaaccctcaacggaaaaaatcgtatgaaaacttggatcgatttataccaaataggtca
gctatggacatggattttgcgcattacatgctcactgaagggaggaaagccaaggaaagc
ccaccttcacaatcgctataccagaagcttttggcagaggcgttcaatatgaacggaagg
cgaattttagccttcaagaacaaaccacccaccctggtggaccctatcccgttgttttca
tcatcatcagttcattcttctaaacctgtcaagccccagcggcacattcctcagagacca
gaaatgacattggatgcccctgacatagtggatgatttctacttgaatttgttagattgg
ggcaacaataatgtgcttgcaatagctcttgggacaaccgtgtatctttggaacgcttca
aatagttctatctcagaagtagtcactgttgatgaggaagatggtcctgtcactagcatt
agctgggcacctgatggacgtcaccttgctgtaggcttggacaattctaatgtccagcta
tgggactctgcaactaatcaaatgctaagaacactccgaggaggtcatcgattgcgagtg
acgtcactggcctggaatcatcacttacttacaactggaggaaaggatgctaaagtcatc
aataatgatgtgagaataagagaacacattgttgaatcatatgagggacaccgacaggaa
gtttgtggattgaaatggtcagcttcaggccagcaattagcaagtggagggaatgataac
cttcttttcatatgggatagatttatggcctcttcaaattcaccaaggcattggcttcac
aagctcgaggaccacacagcagctgtgaaagcccttgcttggtgtccctttcagagcaat
ctgctagcctcgggtggaggtgggaatgataggcacattaaattttggaacacccagact
ggcacatgcttgaactcagtggacaccggctcacaggtttgcgctcttcagtggaacaag
catgagcgggaattgcttagctctcatggatttacagagaaccaactcattctatggaaa
tatccatccatggtaaagatggcagagctcagtggtcacacttctccagtcctctttatg
actcagagcccagatggatacacagtggcatctgcagcaggtgatgaaacattgagattt
tggaatgtgtttgggaatccaaaagcggctaaacctgcaccaaaggcaattgctgaacca
tttgctaatgtatcccacttccgctaa
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