Populus trichocarpa (black cottonwood): 7469944
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Entry
7469944 CDS
T01077
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7469944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7469944
03012 Translation factors [BR:
pop03012
]
7469944
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
7469944
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
7469944
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
7469944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
Rad17
AAA_19
T2SSE
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
7469944
NCBI-ProteinID:
XP_052304018
LinkDB
All DBs
Position
16:4917835..4925216
Genome browser
AA seq
1034 aa
AA seq
DB search
MFLARRSHGAPSFFSKHLLLAAPALSSTTLSYIHRDISTHAMSRRPNFQGGRRGGGGVPR
RGGDRGRGRGGRGGGRGEQRWWDPVWRAERLRQKQSEMEVLDEDEWWSKMEQMKLRGEQE
IIMKRSFSRDDQQKLSDMAFELGLHFHAYNKGKTLVVSKVPLPDYRADLDEQHGSTQKEI
QMPTEIERRVGNLLNSSQKAAAGNESNATSSQGGKHASLGGKIVKPASMLETDAAKEKQS
IELKQKQDKLKASSSVKEMQSFREKLPAFKMRTEFLKAVAENQVLVISGETGCGKTTQLP
QYILEEGISSLRGAHYNIVCTQPRRISAISVAARIASERGESLGETVGYQIRLEALRSAQ
TRLLFCTTGVLLRKLVQDPNLTGVSHLAVDEIHERGMNEDFLLIILRDLLPRRPDMRLIL
MSATINADLFSKYFRNAPTIHIPGLTFPVSEFYLEDVLEKTRYEIQELDSFQGNSRQRRR
EQYSKKDPITELFEAFDIGSQYKNYSASTRLSLEAWSGSQLDLGLVEATIEYICRHEREG
AVLVFLTGWDEISKLLEQIKGNKLLGDQSKFLVLPLHGSMPTINQREIFDRPPPNKRKIV
LATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWVSKASAHQRRGRAGRLQP
GVCYRLYPKIIHDSMLQYQLPEILRTPLQELCLHIKSLQLGAVGSFLSKALQPPDPLAVE
NAIELLKTIGALDDKEELTPLGRHLCNLPVDPNIGKLLLMGCVFQCLSPALTIAAALAHR
DPFVLPIDRKREADAAKRSFAGDSCSDHIALVKAFEGYKEAKRNRNERAFCWEYFLSPVT
LRMMEDMRDQFLNLLSDIGFVNKSRGVSAYNQYSHDMEMVSAILCAGLYPNVVQCKRRGK
RTAFFTKEVGKVDIHPASVNAGVHLFPLPYMVYSERVKTTSIYVRDSTNISDYALLLFGG
NLVASKNGEGIEMLRGYLHFSASKSVLDLIQKLRGELDKLLSKKIEDPCLDINVEGKGVV
SAVVELLHSYNVRY
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtttctagctcgtcgctcacacggtgctccctctttcttttccaaacatctcttacta
gccgcgcctgcgttatcttcaacaactctctcgtacattcatcgagacatctcaactcac
gccatgtcacgccgtcctaatttccaaggcggccgtcgcggaggcggaggcgttccccgt
cgtggtggtgatagaggacggggacgaggaggacgtggaggaggacgtggtgagcagcgg
tggtgggatcctgtttggagagcggaacgattgagacaaaaacagagtgagatggaggtt
cttgatgaagatgaatggtggagtaaaatggagcaaatgaagcttagaggggagcaagaa
ataataatgaagcgtagttttagccgcgatgatcagcaaaagctttctgatatggctttc
gaattggggcttcacttccatgcatacaataaaggcaaaacccttgtcgttagcaaagtt
ccactaccagattatcgagctgatctcgatgagcaacatggatccacacagaaagagatc
caaatgcctacagaaatcgagaggagagttggaaatcttttgaatagctcacaaaaagca
gcggctggaaatgagtccaatgcaacttcttctcagggaggcaaacatgcatctcttggt
ggtaaaatagtgaaacctgcttccatgttggaaacagatgctgctaaggagaaacagagt
attgaactaaagcagaagcaggataaattaaaggctagtagcagcgtgaaggaaatgcag
tctttcagagaaaagcttcctgcattcaaaatgagaactgaatttctgaaagcagttgca
gaaaatcaggtattggtaatttcaggggaaacaggttgtggtaaaacaacacagcttcct
cagtatatattggaggagggaatatcatctctacgtggtgctcattacaacatagtatgc
acacaaccccgccgtatatctgccatttctgttgctgcacgaatagcatctgaaagggga
gagagccttggtgaaactgttggttatcaaattcgtctggaagcattacggtctgctcaa
acccggctccttttttgcaccactggtgtgttactccggaagctggttcaggatccaaat
ttaactggtgtgagccatttggcagtggatgaaattcatgaaagaggaatgaatgaggac
ttcctgttgattattttgcgcgaccttcttcctcggcgtccagatatgcgtcttattcta
atgagtgctaccattaatgctgacttgttctctaaatacttcagaaatgccccaactatt
catatcccgggattaactttccctgtatcagagttctatctagaagatgtgttggagaaa
actcgctatgaaattcaagagttggacagctttcaggggaattcaagacaaagaagaaga
gagcaatattcaaagaaagatcctataactgaattattcgaggcatttgatattggttct
caatataaaaattacagtgcatcaacaagactttctctggaagcttggtcgggttcacag
cttgacctgggtctggtggaggcaacaattgaatatatttgtcgtcatgaacgtgaggga
gctgttcttgtttttctcactggctgggatgagatctccaagcttcttgagcagattaaa
ggaaacaaacttctaggagatcaaagcaagtttctagtccttcccctacatggttcaatg
ccaaccataaatcaacgtgaaatttttgaccgtcctccccctaacaagcgaaaaattgtt
ctggcaacaaatattgcagagagcagtattaccatagatgatgtggtgtatgttgtagac
tgtggaaaggcaaaggaaaccagctatgatgcactgaacaagctggcttgtttgttacca
tcgtgggtttcaaaggcttcagcacaccagagacgggggcgtgctggccgattgcaacca
ggagtttgttatagactgtatccaaaaatcattcatgattcaatgcttcaatatcaatta
ccagaaatactgagaacacctttgcaagaactgtgtctgcatataaaaagtttgcagctt
ggagctgttggatcgtttttgtcaaaggctctacagccaccagatcctcttgctgtggaa
aatgcaattgaactacttaaaaccattggggctttagatgataaggaggagcttactcca
ctcggtcgtcatctttgtaatctccctgtggacccgaatattgggaagttgcttttgatg
gggtgtgtctttcaatgcctcagccctgctttaacaattgcagctgctcttgcacatcgt
gacccatttgtgctgccaatagacaggaaaagggaagctgatgctgcaaaaagatccttt
gctggtgactcttgcagcgaccacatagcacttgttaaagcttttgaaggatacaaggaa
gcaaaacgcaaccgaaatgaaagagcattttgttgggagtatttcttgtcccctgttact
ttgcggatgatggaggatatgagagaccagtttctgaacttgctatcagacattggcttc
gtaaacaaatccaggggtgttagtgcttataatcaatatagccatgacatggagatggta
tcagcaatcctttgtgctggtctttacccaaatgttgtgcaatgtaaaagaagaggaaag
cgaacagcattcttcactaaggaagttgggaaagttgacatccatcctgcatctgtaaat
gctggggtccatctcttccctctgccttacatggtttatagtgaaagggtgaaaacaact
agcatttatgtccgagactcaacaaacatttcagattatgctttgcttctttttggtggt
aatctcgttgccagcaaaaatggagagggtattgagatgctaagaggttacctccatttc
tcagcatcgaagagtgtattggatttgatacagaaactgaggggagaactagacaagctt
ctgagtaagaaaattgaggacccatgcctggacattaacgtggagggaaagggagttgta
tctgcggtggttgagttattgcacagttacaatgtaaggtactaa
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integrated database retrieval system
