Populus trichocarpa (black cottonwood): 7469961
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Entry
7469961 CDS
T01077
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7469961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7469961
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7469961
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
7469961
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-GeneID:
7469961
NCBI-ProteinID:
XP_002323399
UniProt:
B9IIP4
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All DBs
Position
16:complement(5437671..5438949)
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AA seq
296 aa
AA seq
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MSNSDKQPPQRAKTVVIRSVWADNLEEEFKLIRSEIDRYPLISMDTEFPGIVVRPAAGDP
YNRHSGPRAHYLSLKANVDLLNLIQIGLTIADEDGNLPDLGLKDVGFIWEFNFRDFDVAR
DAHAHDSVELLRRQGIDFEKNRELGIDSVKFAELMMSSGLVLNHSVSWVTFHCAYDFGYL
VKCLTQKVLPEELNEFFERVRVYFGDRVYDIKHIMRFCGNLHGGLDRVCKELGVDRVIGK
SHQAGSDSLLTLHAYLKIKDKYFFNDKDDGRGGGGGGGGGGLDKYANVFYGLELFD
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaactccgataaacagccgccgcaacgtgcgaagactgtcgtgatccgatctgtc
tgggcagacaacttggaagaagaattcaagctgatccgatccgaaatcgatagatacccg
ttaatctcaatggacacggagtttcctggcatcgttgtccgtcctgccgctggagatccg
tataatcggcatagcggccccagggcgcactacttgagcctcaaagcaaacgttgatctc
ttaaacctgatccaaatcggactcacgatcgccgacgaggatgggaatttacccgatcta
gggcttaaagatgttgggtttatttgggagttcaattttagggattttgatgtggcgcgt
gatgcacatgcgcatgactcagtggagttattgaggcgacagggtattgatttcgagaag
aatcgtgagctggggattgattcggtgaaattcgctgagttgatgatgtcgagtgggctg
gtgctgaatcactcagtgagttgggtaacgtttcactgtgcatatgattttggttacttg
gtgaaatgtttgactcagaaagtgctgcctgaggagttaaacgagtttttcgaaagagtg
agggtgtactttggagatagggtttatgatataaagcacataatgaggttttgtgggaat
ttacatggtgggttggatcgggtatgtaaggaattgggagtggatcgggttatagggaag
agtcatcaagctggctcagatagtttgttgacattgcatgcttatctgaagatcaaagat
aagtatttcttcaacgataaagatgacggtagaggaggaggaggaggaggaggaggagga
gggttagacaagtacgccaatgttttttatggtttagaattgtttgattga
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