KEGG   Populus trichocarpa (black cottonwood): 7470016
Entry
7470016           CDS       T01077                                 
Name
(RefSeq) uncharacterized protein LOC7470016
  KO
K24739  WD repeat-containing protein 13
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:pop04990]
    7470016
Domain-containing proteins not elsewhere classified [BR:pop04990]
 Other domain-containing proteins
  WD40 repeat (WDR) domain-containing proteins
   7470016
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd EIF3I Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_EML WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_WDR75_1st WD40_Gbeta Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_ACSF4 WD40_RFWD3 Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_VPS8 Beta-prop_Nup120_160 WD40_like KNTC1_N Beta-prop_IFT80_2nd Beta-prop_EMC1_N CPSF_A DUF4457 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 7470016
NCBI-ProteinID: XP_002306125
LinkDB
Position
4:complement(18011117..18016876)
AA seq 515 aa
MHRSLNKMAEQVEEPVDNNSNDKVNNGSTESNRNENNNNNNNDEENKDKKKNVDPELFSC
LLQPVTSDSDPDYIGIRRLLLYRKAESGVRRRLDWRCNGKGYTSYRNYIRRPRNWDGLPS
HQSTPGNSGRWLQSTTPPSHLFEVDSWTSSRDLRSTNLPSTHRTSFSSTASDNDSLRRRG
AEPAYSFVGMHCIFDQCKAAVTVLKFGHMSSDLLAYGASDGTLTVCLVSDPPSVIKKLEG
HSKDVTDFDFSSNNQYIASASMDKTVRVWELSKGICIRVIYGVSSQLCIRFHPVNNNFLS
VGNANREITVFNFSTGRIINKLVFDDKVTSMDHDHTGHLIFCGDAQGCVYSTSMDSHTGA
LSRSHRYRSSGKSKYPVTTVQYRSFSLLAGGPVLLTCTQDGSLSFYSVALEIKGYLTLRC
SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLTRPKHTCVNKLQGHRFPVG
DVAWNHGENLLATSDLYGIVIVWKREKTSQDKYKR
NT seq 1548 nt   +upstreamnt  +downstreamnt
atgcatcggagtctcaataaaatggcggagcaggtggaggagccagtagataacaacagc
aacgacaaagtaaacaacggctcaacagaatctaacagaaacgagaataataataataac
aataatgatgaagagaataaggataagaagaaaaatgtagatccagaattattcagctgt
ttgcttcagcctgttacttcggattccgatcctgattacatcggcattcgccgtctcctt
ctctacaggaaagccgagtccggtgttcgccgccgtcttgattggagatgcaatggaaaa
gggtatacgagctatcgtaattacattcgcaggccaagaaattgggatggtttgccaagc
caccaaagcactcccggaaacagtgggcgatggcttcaatctacgactccaccttcccat
ttgttcgaggtggacagttggacttccagcagggacctgcgaagtaccaacctgccttct
actcacagaacaagtttcagctcaactgcaagtgataatgattccctacgccgccgaggg
gctgaacctgcatattcttttgtaggaatgcattgcatctttgatcagtgcaaagctgct
gttactgttttgaagtttgggcacatgagttctgatttacttgcatatggggcgtcagat
ggaaccttgacagtgtgcttagtctcagacccaccttcagtcatcaaaaaattagagggc
cattctaaagatgtcacagacttcgacttctcgtccaataatcagtacattgcttcagca
tccatggataaaactgtgagagtatgggagttatcaaaagggatttgcattcgagtaata
tatggagtctcttcacaattgtgtattcgttttcatcctgtaaacaacaacttcctctca
gttggcaatgcaaacagagaaattaccgtattcaatttcagcactggcaggattattaat
aaattggtgtttgacgataaggttacatccatggaccatgatcacactggtcacctcatt
ttctgcggggatgcacagggatgtgtatactccacaagcatggactcacacacgggtgca
ttgtcgcggtctcatcgctatcgaagtagtggcaagagcaaatatccagtaacaactgtt
cagtaccggagtttctctctgctagcaggaggccccgtgttgctgacctgtactcaagat
ggaagtttgtcattctatagtgttgccttggaaattaaaggttatctgactcttcgttgc
tcactcaaattggctccacgagtacatagcatccgggcttctttctgccccttgctttcc
cttgaaaaaggagagtatatagttgccggaagtgaggattcaaacgtttatttctatgat
ttgactcggccaaagcatacatgcgtcaacaagctacagggtcatcgctttccagtcggt
gatgttgcgtggaaccacggggagaatttgctggctacatccgatctgtatggcatcgtt
attgtatggaagagagagaagacaagtcaagacaaatataagcggtaa

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