KEGG   Populus trichocarpa (black cottonwood): 7470218
Entry
7470218           CDS       T01077                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7470218
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7470218
   03041 Spliceosome [BR:pop03041]
    7470218
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     7470218
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     7470218
Spliceosome [BR:pop03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    7470218
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 7470218
NCBI-ProteinID: XP_002305079
LinkDB
Position
4:complement(4536098..4538170)
AA seq 384 aa
MEFIKKRKAEENGISIPTGTSPPSPITPLTPEEIRKILEPFTKDQLLDILQSATLHHSDI
LNSVRSVADGDISLRKLFIRGLSSETTSDTLRILFSSFGELEEAIVIHDKNTGKSKGFGF
ITFKHVDSAMLSIREPSKKIDGRITVTQLASNNSSTGDVSLRKVYVGNVPFEITSERLLG
FFSMYGEIEEGPLGFDKSTGKSKGFAFLIYKSEDGAKAAIADPMKNIDGHQVVCKLAVDN
KRVNKTSQGGANAQNSQPLAHPSFPQPQPQNSIGGVTGSLQNYGSASNSYQLNTSLTSSG
YNGAYRVPPYVGAVPNDGGLNNAGASMYRMPQSTVGTGSGVYPDAGSYALSQQQQHQQPS
SMPLPPRFPHGAGGMYQGMPPPYY
NT seq 1155 nt   +upstreamnt  +downstreamnt
atggagttcattaaaaaacgcaaagccgaagaaaacggcatctcaatccccactggcacc
tctccaccatctccaataactcctctaacccccgaagaaatccgtaaaatcctcgaacct
ttcacaaaagaccaactattagacatcctccaatcggccacactccaccactctgacatc
cttaattctgtccgttccgtagcggatggcgacatctccctccggaagctcttcattcgc
ggcctctcttccgaaacaacctcggataccctccgaattctattttcttccttcggagaa
ctcgaagaagctattgttatccatgacaagaacacaggtaagtcgaaaggtttcgggttt
attactttcaaacatgtggactctgctatgctttctattagagaacctagtaaaaaaatt
gatggaaggattactgttactcaattagcatcgaataattcgagtaccggtgatgtttcg
ctaaggaaagtttatgttgggaacgtgccttttgagattacctcggagaggttgttaggg
tttttctcaatgtatggtgagattgaagaaggcccgcttgggtttgataaatctactggg
aaatcaaagggttttgcctttcttatatataagtctgaggatggggcaaaggctgcgatt
gctgatcctatgaaaaatattgatgggcatcaagttgtttgtaagttagctgttgataac
aagagggttaataagactagtcagggcggtgcaaatgcacaaaattcacagccattagcg
catccatcgttcccacaaccacaaccgcaaaattcgattggcggggtaacaggaagctta
caaaattatgggtctgcgagtaatagctatcagttgaatacttcattgacgagttctgga
tataatggtgcttatagggttccgccgtatgtaggggcggttccaaatgatggtggattg
aacaatgcaggggcttcaatgtatagaatgccacagagcactgttggtaccggttctggg
gtgtatccagatgctgggtcttacgctttgtctcagcaacagcagcatcagcagccatcc
tcaatgccactgcctcctagattcccacatggagctggagggatgtatcagggtatgcca
ccaccatattattga

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