Populus trichocarpa (black cottonwood): 7470405
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Entry
7470405 CDS
T01077
Name
(RefSeq) WD-40 repeat-containing protein MSI3
KO
K10752
histone-binding protein RBBP4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
pop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7470405
03083 Polycomb repressive complex
7470405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7470405
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
7470405
Histone modification proteins
HAT complexes
HATB complex
7470405
HDAC complexes
Sin3A-HDAC complex
7470405
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
7470405
PRC2.2
7470405
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
7470405
Heterochromatin formation proteins
Other heterochromatin formation proteins
7470405
Chromatin remodeling factors
NuRD complex
7470405
NuRF complex
7470405
NuRF complex (fruit fly)
7470405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_EML_2
Beta-prop_RIG_2nd
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
WD_LRWD1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_HPS5
WD40_RFWD3
MIOS_WD40
DUF6922
Beta-prop_RIG_1st
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
7470405
NCBI-ProteinID:
XP_002306184
UniProt:
B9H1A2
LinkDB
All DBs
Position
4:complement(19055599..19060417)
Genome browser
AA seq
417 aa
AA seq
DB search
MAAAEDDQEAGQDQLDEEFSVWKKNTPVLYDLVISHPLEWPSLTVQWVPLAAPLPHPTDP
SSFSIHKLVLGTHTSDDFPNFLMVADAVLPTSVADAKIDTSCSSADSVIPKVEITQKIRV
DGEVNRARCMPQNPAIVGAKTSGCEVYVFDSTKQAERKQRDGCDPDLRLTGHDKEGYGLS
WSPFKQGYLVSGSHDNRICLWDVSGNAQDKVLGALQVYEAHESVVEDVSWHLKNENLFGS
VGDDCRLVIWDMRTNQTQHSVKAHKKEINYLSFNPYNEWILATASSDATVGLFDMRKLTV
PLHALSSHTEEVFQVEWDPNHETVLASSADDRRLNIWDLNRIGEEQLELDADDGPPELLF
SHGGHKAKISDFSWNKDESWVISSVADDNTLQVWQMAESIYGDDDIVAADEPPLAEK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcggaggatgatcaagaggcgggacaagatcaacttgacgaagaattctca
gtatggaagaagaacacgccagttctctatgatctcgtcatctcccatcctctcgagtgg
ccatctctcactgtccagtgggtgcccctcgctgcaccactgcctcacccaactgacccc
tcgtctttctctattcacaagctggttcttggcactcacacttctgatgatttccccaac
tttctcatggttgctgatgctgtgctgcccacttccgtcgctgatgccaagattgacact
agttgcagttctgcggattctgtgattcctaaggtggaaattacacagaagatacgtgtt
gatggagaggtgaacagagcacgatgtatgccacaaaatcctgctattgttggtgcaaag
acaagtggttgtgaggtttatgtgtttgattctaccaaacaagcggagaggaaacaaagg
gacggctgtgatccggatttaaggttaactggtcatgataaagaagggtatggattgtcg
tggagtccatttaaacagggttatcttgtgagtggctcacatgataatagaatatgtttg
tgggatgtgtctggcaatgctcaagataaagtgcttggtgcattgcaagtttatgaggcc
catgaaagtgtggttgaagatgtgtcatggcacttgaagaatgaaaatttgtttggttct
gtgggggatgattgtcgattagtgatctgggacatgcgcacaaatcaaacccaacattcg
gttaaagctcacaagaaagagattaactatctatcattcaatccatacaatgaatggatt
ctggccacagcttcttcagatgcaactgttggtctgtttgatatgcggaagctgactgta
ccactgcatgctttaagtagtcacacagaagaggtattccaagtagaatgggatcctaat
catgaaacagtgttagcatcctccgctgatgatagaagattgaacatttgggacctgaac
aggatcggcgaggagcagttagagttagatgctgatgacggcccaccagaacttcttttc
tctcacggaggtcacaaggcaaagatatcagatttttcatggaataaagatgaatcatgg
gtcatctcaagtgtggctgatgacaatacccttcaagtgtggcaaatggctgaaagtatt
tatggtgatgacgacatagtggctgctgatgagcctcctctagctgaaaagtga
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