Populus trichocarpa (black cottonwood): 7470527
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Entry
7470527 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC7470527
KO
K13114
pinin
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7470527
03015 mRNA surveillance pathway
7470527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7470527
03041 Spliceosome [BR:
pop03041
]
7470527
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
7470527
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
7470527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
RSB_motif
Motif
Other DBs
NCBI-GeneID:
7470527
NCBI-ProteinID:
XP_052303136
LinkDB
All DBs
Position
1:complement(21286121..21291064)
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AA seq
473 aa
AA seq
DB search
MGSSSAVEKTENELQREIDELHRQQRQISERLRDPRGLRRGGFSSAAAAAPRNFASNGAR
HRGFVRPADRNEAEDQPPAKRRLLSAVVKVEEDGEIIEDPARAEDVKKQQLAEEGNVDPA
KGTLADGKPAMLRQSGWSRRDVNQRAVKRVVETPVIEPVPRVLPKNQDPSLVSRNKRMLG
QLLGTLEKFRKEDMKLSGTEAFIQRSNALQRAEQKAREESERLRQQEREQIAEQRKKDLT
LRARIAAKAEEKKLELLFIRWSEHHKKLSNFISFNVFLCIVLLLQVIFNFGPKXVHIHNF
IETKISFCSSAHFDCLWDLFFRTKAEPPIYYLFKKPLEKDATLLDQQREQAFLEWKAARR
EELSEYQKQIGDQHLGYVEKELERWQNARKARRANNDANLQETMDKELDTHRLEHGPKTR
KIPGGSNNEDEDDVEDINVGEDDLMDDVLVVDDNSRRVDEVAQPEPNDTSPPS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgggtagtagcagtgctgtagagaaaacggagaacgagctccaacgagagatcgatgag
ctccatcgccagcaacgccagatttcggagcgccttcgtgatcctcggggacttcgaagg
ggaggcttttcctccgccgccgccgccgcccctcgaaacttcgcttctaacggtgctcgt
catcgcggctttgttcgaccggctgataggaacgaggcagaagatcaacctcctgcgaaa
aggcgacttttatctgctgttgttaaggtggaggaggatggagagatcattgaggatcct
gccagagcagaggatgtgaagaagcagcaattggctgaggaaggaaatgttgaccctgct
aaagggactctggctgatggaaagcctgccatgttaaggcaaagtggttggtctaggaga
gatgtcaatcaaagagcagtgaagagggtggttgaaactccagtgattgagcctgttcca
agggtgttacccaagaatcaggatccaagcttggttagcagaaacaaaagaatgctgggg
caactcttaggtactcttgagaaattcaggaaagaagatatgaaactttcaggcactgaa
gcatttatacaaaggtcaaatgccttgcaaagagctgaacaaaaagcacgtgaagaaagt
gaaaggctgaggcaacaagagcgtgaacaaattgctgaacagaggaagaaagatctgact
ctcagagcgcgtattgctgcaaaggctgaagaaaagaagttggaattgctgtttattcgc
tggagtgagcaccacaaaaaacttagcaattttataagttttaatgttttcctgtgtatt
gttcttctgctgcaggttatttttaactttggtccaaaangtgtccatattcacaatttt
attgagacgaagataagtttctgttcaagtgctcactttgattgcttgtgggatctgttt
ttcaggaccaaggcagaacctccgatttattatctgtttaaaaagccgttggaaaaagat
gccaccttacttgaccagcaaagagaacaggcatttttagaatggaaagctgctaggaga
gaggaattatctgaatatcagaagcagattggggatcagcatcttggctatgtggaaaag
gagttggagaggtggcaaaatgcaagaaaagcgaggagagcgaacaatgatgcgaacttg
caagaaacaatggacaaagaactggatacccacaggcttgagcatggtcccaagacaaga
aagatacctggtggaagcaacaatgaagacgaggatgacgtggaggatatcaatgtcggg
gaggatgacttgatggatgatgttctggtggttgatgataacagcaggagggttgatgag
gtagcccagcctgaacccaatgataccagccccccctcctaa
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