Populus trichocarpa (black cottonwood): 7470588
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Entry
7470588 CDS
T01077
Name
(RefSeq) polyadenylate-binding protein 6-like
KO
K13126
polyadenylate-binding protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7470588
09123 Folding, sorting and degradation
03018 RNA degradation
7470588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7470588
03041 Spliceosome [BR:
pop03041
]
7470588
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
7470588
mRNA cycle factors
Stress granule specific factors
7470588
Spliceosome [BR:
pop03041
]
Complex C
Other components
Complex C specific factors
7470588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_occluded
RBD_DEAH11
RRM_5
RRM_3
RRM_RdRP1_2
gpW
Motif
Other DBs
NCBI-GeneID:
7470588
NCBI-ProteinID:
XP_002299747
LinkDB
All DBs
Position
1:complement(17543367..17547254)
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AA seq
561 aa
AA seq
DB search
MTAAVAPWKQQVLQRGASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCY
AYVNLYSHAQASRALGLLNHTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLDFSISSSC
LESIFSKYGTILSCKVAGENGRSKGFGFVQFESQDSALAAQTALHDTMLGGKKLHVCKFV
KKTERTAAAPCEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFV
NFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNL
YVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNG
ALLEGKILHVAKAQCKKDHRQEWHNFSGQNQPQSFYPSNCNTVSSAIHQLHFNFDRSPHI
PFLHHPMFCQHFGVQHPFMAQNYQQKFSKYMPVAETHLGSTLNTRDKSYQQHSSKFATSN
FSNRDLKLGSAGDQKLGSEKKGSKRGAAVEDISTGSPSTKSLSAAKSTDSTVINFGSLLQ
PVVKKLQVCGFSIPPLENIAV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggcggtggcgccgtggaagcaacaagtactacagaggggagcgtcgctgtac
gtgggtgacttggacccggaagtaacagaaacggacttgagagctgcgttttaccatgtg
ggtcccatttcctccctcagactctgccgttgtcgtctcaccggaaagtctctctgttac
gcctatgtcaacttatactctcatgctcaagcatctagagctttgggtcttctaaatcac
actaacttgaagggaaaacccatgaggataatgtggtgtcagagggacccttttgcaaga
aagactggttttgccaatctctttgtaaagaatctagacttttcgatcagcagctcttgc
ttggagagcatctttagcaagtatgggacaatactttcttgcaaggtggctggagaaaac
ggaaggagtaagggctttgggtttgttcagtttgagtctcaggattctgctctggctgct
caaacggctctccatgatactatgctgggtgggaagaaattgcatgtctgcaaatttgtc
aagaagactgaaaggacagcagcagcgccatgcgaagtgttcaccaatctttatgttaaa
aatctagatgaaacaataacagaggatggcctaaaggatatgttttctgtagttggtgat
gtttctagtgttgccatcatgatggatcacgaggggaaatcaaaacattttggattcgtt
aactttaagtctccagatgatgccaaaaaggctgttgatgtcatgaatggttctgtaata
ggttcgaagactttgtttgtgggaaaggctcaaaggaaatctgaaagaacaatgatattg
aagcaagaatacaaggacttgcacaacagaagtactgagaagttgagggcttcaaatctg
tatgtaaagaacctgaatgtagacattgatgacaagaaattgaaagaagttttcagtgcc
tatgggaagattctttccgtgaaagtgatatgccataatgatggaactagcaaacaattt
ggttttgtatgttttgcaagccctgaagaagcaaacaaggctttggttgcactaaatgga
gccctccttgaaggaaagattcttcatgtggcaaaagctcagtgcaaaaaggatcaccgc
caggaatggcacaacttctctggacagaaccaacctcagtctttctatccttctaactgc
aatactgtttcctcagcaatccaccaacttcatttcaattttgatcgctctccacatatc
cctttcctccaccatccaatgttctgtcaacattttggtgttcagcatccttttatggca
caaaattaccagcagaagttttccaaatatatgccagtggcggaaacgcatctagggagc
acgttgaacaccagagacaagtcctaccaacagcattcctcgaaatttgcaacctctaat
tttagcaaccgagacctgaaacttgggtctgctggagatcaaaagcttggttccgaaaag
aagggtagcaagagaggagcagctgtagaagatatttccactggatcaccgtctaccaaa
agtctttctgcagctaaatctactgacagtaccgtcattaactttgggagtcttcttcaa
cccgttgtaaagaaacttcaggtttgtggattctcaattcccccccttgaaaatatcgca
gtctaa
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