Populus trichocarpa (black cottonwood): 7471196
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Entry
7471196 CDS
T01077
Name
(RefSeq) CLIP-associated protein isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7471196
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pop04812
]
7471196
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
7471196
Cytoskeleton proteins [BR:
pop04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
7471196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
HEAT
HEAT_EF3_N
XMAP215_CLASP_TOG
HEAT_EZ
TOR1L1_N
HEAT_2
Vac14_Fab1_bd
Cnd1
PDS5
Adaptin_N
INTS1_R4
Tti2
HEAT_Maestro
MMS19_C
UTP20
HEAT_DAAF5
RRP12_HEAT
Sec7-like_HUS
MMS19_N
Dopey_N
IFRD
V-ATPase_H_N
Npa1
DUF7217
SEN1_N
Motif
Other DBs
NCBI-GeneID:
7471196
NCBI-ProteinID:
XP_024450000
LinkDB
All DBs
Position
2:complement(24193550..24204921)
Genome browser
AA seq
1443 aa
AA seq
DB search
MEEALELARAKDTKERMAGVERLHQLLEACRKSLSSSETTSLVDCCLDLLKDNNFKVSQG
ALQALASAAVLSGDYFKLHFNALVPAVVERLGDGKQPVRDAARRLLLTLMEVSSPTIIVE
RAGSFAWTHRSWRVREEFARTVTSAINLFASTELPLQRAILPPILQMLNDPNPGVREAAI
LCIEEMYSQAGPQFRDELHRHHLPNSMMKDINARLERIEPQVRPSDGLGGNFAPVEMKPT
SLHSKKSSPKAKSSTREISLFGAESDVTEKPIEPIKVYSEKELIREFEKIAATLVPEKDW
TIRIAAMQRVEGLVLGGATDYPCFRGLLKQFVGPLNTQLSDRRSSVVKQACHLLCFLSKD
LLGDFEACAEMFIPALFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRA
AVLRARCCEYALLILEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKT
WPERSRRLFMSFDPVIQRIVNEEDGGLHRRHASPSIRDRSAQTSFTPQASAASHVPGYGT
SAIVAMDRTSSLSSGTSLSSGLLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLE
LSDKQNPSALRSSSLDLGVDPPSSRDPPFPASVPASNHLTNSLTAESTASGIGKGSNRNG
GLVLSDIITQIQASKDSAKLSYRNNMAAESLPTFSSYSTKRISERGSVEEDNDIREPRRF
ANPHVDRQYMDTPYKDLNYRDSHSSHIPNFQRPLLRKHVAGRMSAGRRKSFDDSQLSLGE
VSSYVEGPASLSDALSEGLSPSSDWNARVAAFNYLHSLLQQGPKGVQEVIQNFEKVMKLF
FQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTL
EIVSKTYGVDILLPALLRSLDEQRSPKAKLAVIEFALSSFNKHAMNSEGSGNTGILKLWL
AKLTPLVHDKNTKLKEAAITCIISVYSHFDSIAVLNFILSLSVEEQNSLRRALKQYTPRI
EVDLMNFVQSKKERQRSKSSYDPSDVVGTSSEEGYIGASKKSHYFGRYSGGSVDSDGGRK
WSSTQESTLISGSIGQAAPDETQENLYQNFETSSNTDVYSSKNRDSNYVVGSTGLNLGSR
PGRLENMDNGLNFEGLLTPGMDINGLMSSEPLRAAEGYGHDNNVLSELDLNNHKPAAVKI
NSLADTGPSIPQILHLICNGNDESPTSSKRGALQQLIEASMANDPSVWSKYFNQILTAVL
EVLDDSDSSIRELTLSLIVEMLKNQKDAMEDSIEIAIEKLLHVTEDIVPKVSNEAEHCLT
VALSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMVQLPSFLPALFEA
FGNQSADVRKTVVFCLVDIYIMLGKAFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDA
SHD
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggcgctggaactggcgcgcgcgaaggacacgaaggagaggatggcaggagtc
gagaggctacaccaacttcttgaagcttgtagaaagagtttgagttcgtccgaaacgacg
tcgcttgtcgattgctgcttggatcttttgaaagacaacaatttcaaggtttctcaaggt
gctttacaggcgttggcttctgctgctgttttgtctggtgactactttaagttgcatttc
aatgcgcttgttcctgctgttgttgaacgcctaggtgacggtaaacagcccgttcgtgac
gccgctcgacgcctcttgctcactctcatggaggtttcttcgcctacaataattgttgag
agagctggctcatttgcctggacacacagaagctggagagttcgggaagagtttgctcga
acagtaacatctgcaattaatctttttgcatctactgagcttcctcttcagcgggctatt
ctacctcctattttgcagatgttgaatgacccgaatcctggtgttagggaagcagctata
ttatgcatcgaggagatgtactcacaggccgggccccaattccgtgacgagcttcatcgc
catcatcttcctaattccatgatgaaagatatcaatgccagactagagaggattgaacca
caagtacgcccttcagatggacttggcggtaactttgctcctgttgagatgaagcccaca
agccttcattccaagaaaagcagtccaaaagccaaaagttccacgagggagatatctctt
tttggagcggagagtgatgtcaccgagaaacccatagagccaattaaagtttactcagaa
aaggagctaattagggaatttgagaagattgcggctacccttgttcctgaaaaggattgg
actatccgcatagctgccatgcagagagttgaaggccttgttttgggaggtgctactgat
tacccatgttttcgggggcttctgaagcaatttgttggccctctaaacacacagttatct
gatcgaaggtctagcgttgtgaagcaggcttgccatctattatgctttttatcgaaggat
ctgttgggagattttgaggcatgtgccgagatgttcattcctgcccttttcaagctcgtt
gtgattactgtacttgtaattgcagaatctgcagataactgcataaaaacgatgttgcgt
aactgtaaagttgctcgtgtgcttcctcgcatagctgattgtgcaaagaatgaccgcgct
gcagtactccgtgcaagatgttgcgaatatgcactattgatacttgaacattggcccgat
gctcctgaaatacagcgatctgctgatctctatgaagatctgataagatgttgtgttgca
gacgcaatgagcgaggtgcgctcaactgcaaggatgtgctacagaatgtttgcaaaaact
tggccagagcgttcccgtcgtttatttatgtcctttgatcctgttattcaacggattgtt
aacgaagaggatggaggcttgcacaggagacatgcatctccttccatccgtgatagaagt
gctcaaacatcatttacccctcaggcatctgcggcttcacatgtacctggatatggaact
tcggctattgttgcaatggatagaacttcaagtttatcctctgggacatctctgtcttct
ggtcttttgctctcacaagcaaagtcccttggtaaaggtactgaacgtagtctggaaagt
gtgttgcacgctagtaagcagaaggtcactgcaattgaaagcatgcttagaggtttggaa
ttatccgacaaacaaaatccttcagctctccgttcatcaagtttggatctaggagttgac
cctccatcatctcgtgatccaccattccctgcatctgttcctgcctctaatcatctcaca
aactctttgacagcagaatcaactgcttctggtattggtaaaggcagtaaccgcaatggt
ggcttggtcttgtctgatattattacccaaattcaagcttccaaagattctgctaagcta
tcatatcggaataatatggcagccgagtctttgccaacattttcatcatattcaacaaag
aggatttctgaaagaggttcagttgaagaggacaatgacattagggaacctaggcgattt
gcgaacccacatgtagacaggcagtatatggacacgccttacaaagatttaaactacagg
gattcacatagcagtcacatccccaacttccagagaccacttttgagaaagcatgtggct
ggacgaatgtctgcgggcaggcgaaagagttttgatgatagtcaactctcacttggagag
gtgtcaagttatgtagaaggtccagcatctctcagcgacgcattgagcgagggacttagt
ccaagttctgactggaatgctagggttgctgctttcaattacctccattctttgctgcag
caaggcccaaaaggtgttcaagaagtaattcagaattttgagaaggtaatgaagttgttt
ttccagcatctggatgatccgcatcataaagttgcacaagcagctctctcgacacttgca
gatattattccatcttgccgaaagccatttgagagttacatggaacggatcttaccccat
gttttctcccgattaattgacccaaaggagctagtcaggcaaccttgctccacaactttg
gaaattgtcagcaaaacttatggggttgatattcttttaccagcattgctccgttcacta
gatgagcagaggtcaccaaaagccaaattggctgttattgagtttgccctcagttcattt
aacaagcatgcaatgaactctgaaggctctgggaatactggcattttgaagttatggctt
gctaagctgacaccgttagtacatgataaaaatactaagctcaaggaagctgctattact
tgcattatatcggtctattcacactttgattccatagctgtcctcaatttcattcttagt
ttatcggttgaagaacaaaattccttgcgacgagcccttaaacagtacactcctcgtatt
gaagtggacctaatgaactttgtgcagagcaagaaagagcgacagcgatctaagtcctct
tatgacccatctgatgttgttggaacatcatcagaagaaggatatattggtgcatcaaag
aagagtcactattttggaaggtattctggtggttctgttgatagtgatggcggcaggaag
tggagttctacccaagaatcaaccctgatatcgggaagtattggccaagcagctcctgat
gaaactcaggagaacttgtatcagaattttgagactagttctaatactgatgtctatagt
tcaaaaaatagggattcgaattatgtggttggttctaccggtctgaacttgggatcccgg
cctggccggctggaaaacatggacaatggccttaactttgaagggctgttgaccccaggt
atggacattaatggattgatgagttctgaacctctacgtgctgctgaaggctatgggcat
gacaataatgttctttctgagttggaccttaataatcataaacctgcagctgtgaagatt
aattctttggctgacactggtcctagcattcctcaaattcttcatctgatatgcaatggt
aatgatgaaagccctacctcaagcaagcgtggtgcacttcagcagttaattgaagcttct
atggctaacgatccctctgtttggtccaaatacttcaatcaaattttaacggctgtactg
gaggtgttggatgattctgattcatcaatccgagaacttactctttcattgattgtggaa
atgctaaaaaatcagaaagatgccatggaagattctattgagattgctattgagaagctg
cttcatgttacagaggatattgttccaaaagtttccaatgaagccgagcactgcttgact
gttgcattgtctcagtatgatccattcagatgcttaagtgtgattgtccctttattggtt
actgaagatgagaaaactcttgtaacctgcataaactgtttaactaagcttgtgggtcgt
ctttcacaagaggagctgatggtccagttaccatcatttttgcccgcgctttttgaagct
tttggaaaccagagtgctgatgttcgcaagactgtggttttctgtctggtggatatatat
atcatgcttggaaaagcatttttgccgcacttggaagggcttaacagtacacagctgcgt
ttggtgaccatttatgctaatcggatatcacaggcaagaacaggtactgcaatagatgct
agccatgattag
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integrated database retrieval system
