Populus trichocarpa (black cottonwood): 7471592
Help
Entry
7471592 CDS
T01077
Name
(RefSeq) EIN3-binding F-box protein 1
KO
K14515
EIN3-binding F-box protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04016
MAPK signaling pathway - plant
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
7471592
04075 Plant hormone signal transduction
7471592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7471592
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
7471592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_4
F-box
F-box-like
LRR_RPS2
Motif
Other DBs
NCBI-GeneID:
7471592
NCBI-ProteinID:
XP_002308665
LinkDB
All DBs
Position
6:25195929..25199897
Genome browser
AA seq
646 aa
AA seq
DB search
MSKVFGFAGENDFCPGGPIYTNHKEQNLFLSIGRPVDVYFPSRKRSRISAPFVFTEERFE
QKKQASIEFLPDECLFEIFRRLPGGDERGACACVSKRWLSLLSNICKDELCSQNESAKKN
TQVKSEVEDEEIEGDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLFIRGSNSSQGVT
KVGLRAIARGCPSLKVLSLWNLPSVGDEGLSEIANGCHKLEKLDLSQCPAITDKGLLAIA
KSCPNLTDLVIESCTNIGNEGLQAVGQHCTNLKSISIKNCPAIGDQGIAALVSSATNVLT
KVKLQALNITDVSLAVVGHYGKAVTDLFLTSLSNVSERGFWVMGNGQGLQKLKSMTVASC
VGLTDTGLEAVGKGCPNLKQFNLHKCSFLSDNGLVSFAKSAVSLESLLLEECHRITQFGF
FGSLLNCGANLKAASLVNCFGIKDLKLDLPELSPCKSLRSLSIRNCPGFGDGSLALLGKL
CPQLQNVELSGLQGVTDAGFLPVLENCEAGLVKVNLSGCVNLSDKVVSVMTEQHGWTLEV
LNLDGCRRITDASLVAIAENCFLLSDLDVSKCATTDSGIAAMARSNQLNLQVLSMSGCSM
ISDKSLLALIKLGRTLLGLNLQHCNAISSSTVDVLVERLWRCDILS
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaggtctttggatttgctggtgaaaatgatttttgccctggggggccaatttac
acaaaccataaggagcagaacctctttttgtctatcggccgtcctgtggacgtgtacttt
ccttcacgcaagaggtctcgcatcagtgctccatttgtcttcactgaagagagattcgag
cagaaaaagcaagcttctattgaatttttgccagatgaatgcctctttgaaatcttcaga
cgtttgcctggaggcgatgagagaggtgcctgtgcatgtgtttcaaagcgttggcttagt
cttctaagcaatatctgcaaggatgagctttgcagccagaacgaatcagctaaaaagaac
actcaagtgaaaagtgaggttgaagatgaggaaatcgagggtgatggatatctgtccagg
agcctggaggggaaaaaggccacagatattagacttgcagccattgctgttggaactgct
agtcggggaggattgggcaagctttttatccgtggaagcaattccagtcaaggagtgaca
aaggtaggcctgagagcaattgctcgtggatgcccatctctgaaggttctttccctgtgg
aatttgccgtctgttggggatgaaggtctatcagagattgcaaatggctgtcacaagctg
gagaagctagatctttcccaatgccctgcaattactgacaagggtttgcttgcaatcgca
aagagctgccccaatctgactgatctagtgatagaatcttgcacaaacattggtaatgaa
ggtctgcaagctgttggccaacattgcaccaatctgaagtccatttcaattaaaaactgc
ccagctattggggatcaaggaattgcagccctagtatcttccgccacaaatgttttgaca
aaggtgaagctccaagctttgaacatcactgatgtgtccctggctgttgttggacactat
ggcaaggcagtaactgatctttttctgacaagcctctcaaatgtcagcgagaggggtttt
tgggtcatgggtaatggccaagggttgcagaagttgaagtccatgacagttgcatcctgt
gtgggattgacagatactggacttgaagctgtgggaaagggttgcccaaatttgaaacag
ttcaacctccacaagtgttccttcttatctgacaatggactcgtctcatttgcaaaatct
gcagtgtcactcgagagcctgcttttagaggagtgccacaggatcacccaatttgggttt
tttggttcccttttaaactgtggtgcaaatctgaaggctgcttctctcgtgaactgcttt
gggattaaggacttaaagctagacttgcctgagctgtctccttgcaaatccctgcgatca
ttgtccatccgcaactgccctggttttggtgatggtagtcttgctttgttgggtaagttg
tgcccgcaactgcagaatgtggaattgagtgggcttcagggagtaactgatgctgggttt
ctcccagtgcttgagaactgtgaggctggcctggtgaaggttaacctcagtggttgtgtc
aatttgtccgacaaagtggtgtcagtgatgactgagcagcatggttggactcttgaagtg
ctaaatcttgatggatgcaggaggataaccgatgcaagtttggtggcaatagcagaaaac
tgtttcttgctatctgaccttgatgtctcaaagtgtgcaaccactgattctggtattgca
gccatggctcgctcaaaccagctcaatctgcaggtcctctctatgtcaggttgctctatg
atatcagataagagcttacttgccctcataaaactgggccggaccctcttggggttgaat
ctccagcactgcaatgctattagcagcagcactgttgatgtgcttgtggagaggttatgg
aggtgcgatattctttcctaa
DBGET
integrated database retrieval system