Populus trichocarpa (black cottonwood): 7471626
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Entry
7471626 CDS
T01077
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7471626
Membrane trafficking [BR:
pop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
7471626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
7471626
NCBI-ProteinID:
XP_024452128
LinkDB
All DBs
Position
3:complement(10443488..10452149)
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AA seq
1405 aa
AA seq
DB search
MATNPPFNVMEDQTDEDFFDNLVDDDDFRPTNSDSAPKFTEGSDSDEAKAFANLSIEDAK
GGFEGKGEINSGDDAAGLDDVKAEESNALESVNPLGLSDGLVESNNDGIGSAVVPEAIVS
QSSESMKSGAKEVGWGSFYADSAENGFGSSSDFFNDFGGISEDFPVKTVESVGNLENTDG
GGLDNSVCYQKYQDGAHVYAGSVENVNEQDLNSSQHWENMYPGWKYDANTGQWYQVDAFD
ATASVQGIVDGALGGEWASASASDGKTEVNYLQQTSQSVVGTVAETSTTESVSSWNQVSQ
GNNNGYPEHMVFDPQYPGWYYDTMVGEWRSLESSTSSAKSTTVQTNGQQNQNGFAFSDPY
SQNSSSTYAEYGQAGKYGSQGYNSQGQHGSWDESYGNNQQNLNMWQPQTTAKIDAVSNFG
GNLQLHKSYGSNFSMNNHVDQQKAINSLGTVPSYDKASQSNAEANELVGLQNFVPGGSFS
QQYNQGTVKQNEQANFSNDYSCSQEQVSVTHQSFQSNQQFSYAPNTGRSSAGRPPHALVT
FGFGGKLIVMKDGSSLRNTYFGNQDRVGGSISVMNLVEVLSGSSDNSSSVGGSTSCYFDA
LCQQSFPGPLVGGNVGNKELNKWIDERIAHCELPDVNHKKGKALRLLLSLLKLACQHYGK
LRSSFGTDNLLKESDAPESAVAELFGSVKRNGTQFSEFGALDHCLQNVPSEGQIRATASE
VQHLLVSGRKKEALQCAQEGQLWGPALVLASQLGDQYYVDTVKLMALRQLVAGSPLRTLC
LLIAGQPAEVFSTNATGHGGLHGDFSTPQQPVQLGTNGMLDDWEENLAVITANRTKDDEL
VLIHLGDCLWKDRSEITAAHICYLVAEANFESYSDTARLCLIGADHWKHPRTYASPEAIQ
RTELYEYSKVLGNSQFILLPFQPYKLIYAYMLAEVGKVSDSLKYCQAVLKSLKTGRAPEV
ETWKQLVLSLEERCRAHQQGGYTTNLAPAKLVGKLLNFFDSTAHRVVGGLPPPVPSASQG
SVQDSHHQQVAPRVSGSQSTMAMSSLMPSASMEPISEWAADGNRMTMHNRSVSEPDFGRS
PRQVDSSTEETSSSAQSKASGPVVSSRFGRFGFGSQLLQKTVGLVLRPRSDKQAKLGEKN
KFYYDEKLKRWVEEGAEPPAEEPALAPPPTTLGFQNGGSDYNLKSSLKSDVSSTDGSPPF
KSPTPMDRTSGIPPIPIGSNQFSACGRMGVRARYVDTFNQGGGSPANLFQSPSVPSVKPA
VAANAKFFVPTPAPPHEYSMEAIAENIQEDSATTENPSTSNMNKNGPSHPSTSSALTMQR
FSSVDNITRKGAMINGNGPVSSHSRRTASWSGSFSDSFSPPKAVESKSQGEMLSMSPSSF
MPSNHSMTRMSSSGSFGDDLHEVEL
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggctacgaatcctccatttaatgtgatggaggatcagacggatgaggatttttttgat
aatttagttgatgatgatgattttagacccactaattcggattcagcccctaagttcact
gagggaagcgattccgatgaggcgaaagcctttgccaatctcagtattgaggatgcaaaa
ggtggattcgaagggaagggtgaaatcaattcgggcgatgatgctgcaggattggatgat
gtgaaggcggaagagagtaatgcgttggagtcggtgaatccgctgggcttgtctgatggg
ttggttgagtctaataatgatgggattggatctgcggttgtgcctgaggctatagttagt
caaagtagtgaatccatgaaatcaggggctaaggaagtgggctggggttcattttatgca
gattctgcagagaatgggtttggttcatcctctgatttctttaatgattttggaggcatt
tcagaggattttcctgtgaaaacagttgaaagtgttggtaatttagagaacacagatggt
ggaggattggataattcggtctgttaccagaaatatcaagatggtgcacacgtttatgca
ggatcggtggagaatgtgaatgagcaggacttgaatagcagtcagcattgggaaaacatg
taccctggatggaagtatgacgcaaacactgggcaatggtatcaagtggatgcttttgat
gctacggcaagcgtgcaaggaattgttgatggtgctttggggggtgaatgggcttcagct
tctgcctctgatgggaaaacagaggttaattatttgcagcagacttcacagtctgtggtg
ggaactgtggctgagactagtacaaccgagagtgtgtctagctggaatcaggtttcccaa
gggaataataatggttaccctgaacacatggtttttgacccacaatatcctggttggtat
tacgacacaatggtaggggaatggcgctctctggaaagttccacatcatcagcaaaatca
acaactgttcaaactaacggtcagcagaatcaaaatggatttgcatttagtgatccttat
tcgcaaaatagtagtagcacatatgctgagtatgggcaagctggcaagtacggttcacaa
ggctataatagccaaggccaacatggcagctgggatgagtcttatggtaacaatcagcag
aatttgaatatgtggcaacctcagactactgctaagatagatgctgtttcgaattttggt
ggaaacctgcaattacataaatcatatggttcaaacttttccatgaacaaccacgtggat
cagcagaaagctatcaattctctggggacggttccatcatatgacaaagcaagtcaaagt
aatgctgaggctaatgagcttgttgggttgcaaaattttgtacctggtgggagcttcagt
cagcagtataatcagggaactgtaaagcagaatgaacaagcaaacttttcaaatgattac
agttgcagtcaggaacaagtaagtgtcacccatcaatcatttcagagtaaccagcagttt
tcttatgctcccaacacagggagatcctctgctggccgtcctccacatgcattggttact
tttggatttggtgggaagctcatagtaatgaaagatggcagttctctcaggaacacatac
tttggcaaccaggatcgtgtaggaggctcaatctctgtaatgaacttggtggaggttttg
tcaggaagtagtgataattcttcgagtgttggagggagcactagctgttattttgatgct
ctctgccaacagtcctttccaggtccgttggtgggtggcaatgttggaaataaagagttg
aataagtggattgatgagaggattgcacactgtgaattgcctgatgtgaatcataaaaaa
ggcaaagcattgaggttgcttctttctttgcttaaattagcttgtcaacattatggaaaa
cttcgatcatcttttggaactgacaatttattaaaggagagcgatgctccagaatcagca
gttgcagaactttttggatctgtcaagaggaatggcacccaattcagtgagtttggtgcc
cttgaccactgcttgcagaatgtgccgtctgaaggacaaattagggcaactgcttctgag
gtacaacatcttctggtttctggtagaaaaaaagaggccctacaatgtgcacaagaaggc
cagttgtggggacctgcacttgttcttgcatcacagctgggtgatcagtactatgtcgat
actgtcaagctaatggcacttcgccagctggttgctggatctcctttgcggacattatgc
ttgctaatagcagggcaaccagctgaggtattttccacaaatgctactggacatggtggc
cttcatggtgattttagtacacctcaacaacctgtacagcttgggacaaatggaatgctt
gatgattgggaagagaatttggctgtaataactgcaaacagaacaaaagatgatgaactt
gtgctcatacatcttggagattgcctatggaaggatagaagtgagattactgctgcacac
atctgctatttagtagcggaagcaaactttgagtcgtattcagacactgcaaggctatgc
ctaattggagcagatcactggaagcatcctcgaacatatgctagtccagaggctattcag
agaactgagttgtatgaatactcaaaggtgcttggtaactcccagtttatcctgctgcca
ttccagccatataagctcatatatgcatacatgctggctgaagtgggcaaagtctctgat
tcactcaagtattgtcaggctgttttaaaatccctaaaaaccggtcgagctccggaagta
gaaacatggaaacaattagtactgtcccttgaggaaagatgtagagcccatcagcagggt
ggatacaccacaaatttggctcctgcaaagttagttggcaagttgctcaacttttttgat
agcactgcacatcgtgttgtcgggggcctaccaccaccggtaccatcagcatcacaagga
agtgtgcaagatagccatcaccaacaggtggctcccagagtctcaggcagtcagtcaaca
atggccatgtcatcactaatgccttctgcttcgatggagcccataagtgaatgggcagct
gatggaaatagaatgacaatgcataacagaagtgtttcagagccagactttggtagaagt
ccaagacaggttgattcatcaacagaagaaacttcatccagcgcacaaagcaaggcatca
ggcccagtggtgtcatctcggtttggtcgttttggttttggttcacaacttttgcagaag
actgtggggctggtcttaagacctcggtcagataaacaggctaaattaggtgaaaagaac
aaattttattacgatgaaaagctcaagagatgggtggaggaaggtgctgaacccccagct
gaagaaccagccttggctccccctccaacaactctaggcttccagaatggagggtctgac
tacaacttgaaatcctcattgaagagtgatgtatcttcaaccgatgggagcccaccgttt
aagagtcccactccaatggaccgtacctcagggattccacctattccaatcggttcaaat
caattctcagcttgcgggcgcatgggtgtacgagcaaggtatgttgacacctttaaccaa
gggggtggaagcccagcaaatctgttccagtccccgtctgttccatctgtgaaacctgct
gttgctgcaaatgcaaagttttttgttcccacacctgcaccaccacatgaatattctatg
gaagctatagcagaaaacatacaagaagacagtgcaactactgaaaacccttcaacatct
aatatgaacaagaatggcccttcacatccttcaacatcttcagcactaactatgcaaaga
ttttcaagcgtggataacattacaaggaagggggctatgataaatggcaatggccctgtt
tcatcccactcgcgacgaacagcatcttggagtgggagcttcagtgattcatttagtcct
cccaaggcggtagaatccaaatcgcaaggggagatgttgagcatgtccccttcgtcattt
atgcctagcaaccattccatgactcgaatgtcaagtagtggcagttttggtgatgacctt
catgaggtggagctttga
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integrated database retrieval system
