Populus trichocarpa (black cottonwood): 7471722
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Entry
7471722 CDS
T01077
Name
(RefSeq) peroxisome biogenesis protein 5 isoform X1
KO
K13342
peroxin-5
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
7471722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7471722
Membrane trafficking [BR:
pop04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
7471722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_11
TPR_16
TPR_14
TPR_CcmH_CycH
TPR_19
TPR_8
TPR_7
TPR_9
TPR_12
PPTA
TPR_20
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
7471722
NCBI-ProteinID:
XP_024449399
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All DBs
Position
1:49628855..49637268
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AA seq
747 aa
AA seq
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MAMRELVTGAAACAVPGSSSSSSNPLGALANALIGSSSKPLEGLKEIPTSTTTATEPPLY
QDATAEDRLRGLPGADFDHSFSQHPTSQGSEFLRRFRTSDQNGFANAWDEIQRSGPPPPP
ALLDHGLPPPQLQPTLDGPPQRVLSNFLHSFVGSSHGGIPFRPAPLPALGLSEGDKQCIR
DRSSIMARHFFADKSEDFINTQVNALLSSLDIDGDVRVKGPLPGRFQELEDYWNESQAAR
RPGPPQADGWVTEFSQHRIDHGDPNVWAHSFEQQHGANGWASEFEQEQLISAADQMGGAN
ISNLSTMEQTRMLAHTLAQNNDPKFQNSKFLQFVSKMSRGELIIDDNQVKPAALSSPGDW
ATEYQQKYSGGRWADEYARDQLSHGPDQWANEFAAEREQSRPVDDKWVNEFSKLHVDDWA
DEFGRQVGEGAFGEISTDNWADTYDEYLSEQVVAKQKPDASRGVYVFTDMNPYVGHPNPL
KEGQDLFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAHEAD
PTNLEVLLALGVSHTNEFEQAAALKYLYGWLQHHQKYRTLATPELSDSLYYANVARLFNE
AAQMAPEDADVHIVLGVLYNLSREYDKAIAFFQTALKLKPQDYSLWNKLGATQANSVQSA
DAILAYQQALDLKPNYVRAWANMGISYANQGMYEDSIRYYVRALAMNPKADNAWQYLRIS
LSFASRNDMLEACDSRNLDALQKEFPL
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgcgagagcttgtaacaggagcagcagcctgtgctgttccaggttcttcctct
tcatcatctaatcctctcggtgctctcgccaatgctcttatcggttcctcttccaagcct
ctggaagggctgaaggaaattccaacctctacaaccacagctacagagcctccgttgtac
caggatgccactgctgaggaccgcttgagaggactccctggagctgactttgatcactcc
ttttctcagcatcctacttctcagggttcagaatttcttcgtcgctttcgcacttctgat
cagaatggatttgccaatgcttgggatgagattcagcgctctggtcctcctcctcctcct
gctctattggatcacggcctacctcctcctcagcttcaaccaactttggacggaccaccc
caaagagtgttgtcaaactttttgcactcctttgtgggcagtagccatggtggaattcca
tttcgtcctgctccactacctgcattaggattgtctgaaggtgacaaacaatgcatacgt
gaccgtagcagcattatggcccggcatttttttgctgacaagagtgaagattttatcaat
acacaggtgaatgcacttttgtcttcgttagatattgatggtgatgtgcgggttaaggga
cctttacccggtaggttccaagagctagaggattactggaacgagtctcaagctgctcgg
agacctggtcctcctcaagctgatggatgggttactgaatttagccaacacagaatagac
catggtgatcctaatgtttgggctcactcatttgaacagcagcatggtgctaatggttgg
gcctctgagtttgagcaggaacagttgatctcagcagcagatcaaatgggaggtgcaaat
atctcaaacttatctacaatggaacagactcgaatgcttgcacacacactagctcagaac
aatgaccccaaatttcagaattctaagtttcttcaattcgtctcaaagatgagtcgcggt
gaacttattattgatgacaatcaagtcaagccagctgcgttgtcttcaccaggggattgg
gcaacggaatatcagcaaaaatattctgggggtcgttgggctgatgaatatgcacgtgac
cagctttctcatggacctgatcaatgggcgaatgagtttgctgctgaaagagagcaaagt
cggcctgttgatgataagtgggtaaatgaattttcaaagttgcatgttgatgactgggca
gatgaatttggacgacaggttggagaaggggcttttggggagatttcaactgataattgg
gcagatacttatgatgagtacctaagtgagcaagtagttgccaagcagaagccagatgct
tcaaggggcgtctatgtgtttacagacatgaatccttatgtcggtcacccgaatcctttg
aaagaaggccaggacctattccgcaaggggcttttgagtgaagctgtgcttgctttagag
gctgaagttttgaaaaacccagataacgctgaaggttggaggttgcttggaatagcacat
gcagagaatgatgatgatcaacaggcgattgcagccatgatgcgcgcgcatgaagctgat
cctacaaatcttgaagtgcttcttgctcttggtgtgagccatacaaatgagtttgagcag
gcagctgcattgaaatatttatatggatggctacaacatcatcaaaagtacagaacacta
gccactccagagctttctgattctttgtattatgctaatgttgctagattattcaatgaa
gctgctcagatggcacctgaggatgctgatgtgcacatagtacttggtgtcctgtacaat
ctgtcccgggaatatgacaaagccattgcttttttccagacagctttgaaactcaagcct
caggattactctctttggaacaagcttggtgcaacacaagccaatagtgttcagagtgct
gatgcaatattggcatatcagcaggcacttgatctgaagcctaactatgttcgagcatgg
gcaaacatgggaatcagttatgccaaccagggtatgtatgaggattccatccgatactat
gttcgggcacttgctatgaatcccaaggcagataatgcttggcaatatttgaggatttct
ttaagttttgcttctaggaacgacatgttggaagcttgtgattctcgaaatcttgatgct
ctacagaaggagttcccactataa
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