Populus trichocarpa (black cottonwood): 7471858
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Entry
7471858 CDS
T01077
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1 isoform X2
KO
K14411
RNA-binding protein Musashi
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7471858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7471858
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
7471858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
7471858
NCBI-ProteinID:
XP_006377630
UniProt:
B9I165
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All DBs
Position
11:11249541..11253605
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AA seq
478 aa
AA seq
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MESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRATGRARGFGFVVFADLTVA
ERVIMEKHVIDGRTVEAKKAVPRDDQHILSRSISNIHGSPGPGRTKKIFVGGLASTVTEN
EFKKYFEQYGIIIDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR
AVPKELSPGPSRSPLMGYNHGLTRANNFLNSYAQGYNMSSVGGFGMRMDGRFNPLVTGRS
GFAPFGTSGYGTSMNLEPVLSPSYGGGSNFGNAPAYGRISSPYYSSNPSRYSTPIGYGVG
NARNDSLLSPATRNVWGNGGLNTATNPGSPGPLVGSGSGSFGVSFGNNGANWGTSTVSAQ
GGGIASGYTSGSMGYGNGDSNYSFGGSGYARNSGASVPPTSSFSGSIGGYEGSYGELYRS
GSVYGDSTWRTAIPELDGSGSFGYGLGDVASDVTTKSSEGYIGSYGVTSRQSNRGIAT
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagatcttggtaagctcttcattggtgggatttcatgggacactgatgaggaa
cgtctaaaggaatattttagcaagtatggggaagtggttgaggcagtgatcatgagagat
cgagcaacaggccgtgcccgtggctttggttttgttgtctttgcagatcttactgttgcc
gagagggtcatcatggagaagcatgtgattgacggccgcacggttgaagcaaagaaggct
gttcctagggatgatcagcacattttaagtagaagcattagtaatattcatggttctcca
ggtcctggacgcaccaaaaagatttttgttggaggcctggcatctacagttaccgaaaat
gaatttaagaagtactttgagcagtatggtattattattgacgttgtagtgatgtatgat
cataacactcaaaggccaagaggctttggcttcatcacttatgattcagaggaagcagtt
gacagagttctgcataaaacatttcatgaactcaatggtaaaatggttgaggtcaagcgg
gcagtcccaaaggagttatcaccagggcctagtcggagccctctgatggggtacaaccac
ggtttgactagggccaacaactttcttaattcatatgctcagggatataatatgagctct
gttggaggttttggaatgaggatggatggtaggtttaatccacttgtcactggtcgaagt
ggctttgctccatttggcaccagtggttatggaacgagtatgaatttagagccggtcttg
agtccaagctatggtggaggttccaactttggcaacgctcctgcatatgggcggatctca
agtccctattatagtagtaatccaagcaggtacagcacccccataggttatggtgttggg
aatgcaagaaatgattctctcttgagccctgctactcggaatgtttggggaaatgggggc
ctcaacactgccacaaatcctggcagccctggtcctctggtgggatctggatctggaagt
tttggagtttcatttgggaataatggagcaaattggggcacctctactgtttcagctcaa
ggtggagggattgcttctggctatactagtggcagcatgggttatgggaatggtgacagc
aattatagttttggtgggtcaggatatgcaagaaacagtggagctagtgtaccaccaact
tcatcattctctggttcaattggtggttatgaggggtcctatggggaactttaccgtagt
ggttcagtttatggtgattcaacttggcgaactgcaatccccgagctagatgggtccgga
tcatttggttatggactcggagatgtagcttcagatgttacaactaagagttctgagggt
tatattgggagttatggtgttacaagtagacagtcaaatagaggaattgctacctag
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