Populus trichocarpa (black cottonwood): 7472148
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Entry
7472148 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7472148
KO
K14311
nuclear pore complex protein Nup188
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7472148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7472148
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7472148
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
7472148
NCBI-ProteinID:
XP_024463972
LinkDB
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Position
9:10622944..10638857
Genome browser
AA seq
1971 aa
AA seq
DB search
MSNPKTVDSSLWFDSFTTTLTDLENASLSSDLPPHLAKKLKENHVWFVETVSLFKKPNAN
SREALNSEIIKIGSHEVTVKPELKVKALHISSYLCLDEVQSYILVERSLECDDLAVDSMV
EDCLHVVLLQYYIERQCLLKCSRRILMHALYVGICSKEENVARDEAAKLISDGLEHKLIS
VLQDLLSSSHPEQMDVDLFTLWAEETLIEDNLVLDILFLLYYESLCTCNGEKWKKLCLLY
KGILSGSYNFGRLAISAEALKSSYHASTQLLLILIETLDLENLLQLVHDGVPFRQGPSVF
SVTDIQQMDVLISSFVTLGTREAGPLILAWAVCLCLISSLPGSEENSVLMEIDHVGYVRQ
AFEGASLSIFVDVLESDLLKESDGPVAGYRSVLRTFISAFIASYEINLQLEDSTLSLILD
ILCKIYRGEESLCIQFWDKESFIDGPIRCLLCNLEGVFPFRTAEFVRLLSALCEGSWPAE
CVYNFLDKYVGVSSLFEITSESLVDSASQAVETQLPLHVPGADSLIIPSKTRGHVLKVID
GNTALVRWEYAQSGVLVLLLRLVNELYLESNKEVFLTFDLLSRLVSFNTAITFTMMEIGN
TFYLQAAGVNEQMEKKFWVVDVICAVIKKSSSNSGNAAVMSMGVSILASMLTCAPSHIAA
VVLKANIFDATWKTSTFEVGCDGPSSGSWLLSGKLVKMLLLDSEQNDYDKPLTISVLDFT
MQLVEARLENDLVLALVVFSLQYILVNHEYWKYKVKHVRWKVTLKVLEVMKACITSVSFS
EKLALVIRDMLLNDSSIHNALFHLACTTKQTLENLYVSRLVELEEIEGCQLAISSALDII
YMMLSKFCKDISPNLPVFHLSVLSSTMKPIPVVAAAVSLISYSRSPAVQVGAAKVLSMLF
TTADYMQPYLSGNVCFGLDDKQIADMRHFVKSTLVKQLEWNEDLFVATVNLLTYAARYQP
AYLLAIFSLKEDTEVQLSNGGGTKQAINELSNGSLCSKKSSLLDGLMQYVERSNEFIDSN
PRVLFTVLDFLKALWQGAVHYISILECLKSSGKFWKQLSNCISSDARSITSPFENVAETQ
SQSLALKYQCQSAILEMMAHDMFLKKKLVHAESVLKEVSELERNNKASSTEKSKSVNDCE
LRDILSSWWKRPIFGNLINLYASCEYDNEISNRAKVAASLFIVHAMGKLVIGNAGSLSIS
LVEKIQITFKHLSCQLAFSELLAQYSQQGYSEGKELKGLILNDLYHHLQGELEGRKIGPG
PFKELCQYLVESNCLLSYQYKYGGDHYGNTKDIHLYDLMRIRSDLGLNMWDYTDWKDSKA
IAQTMLECFQDANSMVLLASSKLSALKALLTALIMWEDNSPENKGTTEGKIPDQLCFSCI
DNICKSFRTTVESLAPVLDASEEILDFLAALAELILHLMKSAQSNLSLSICILVLKTSGS
GLKLLGDFRSSATGVKKTMKLLLMLLLFTLEISNTSDKESEDFAEVSNGCLGLLPTLCNC
ITATEHSSLSLATIDLVLTSFLTPNTWFPIIQKHLQLPHVILKVHDKSSFSSVPITLKFL
LTLARVRGGAEMLLSADFFSSLRALFADSSDVGPSTVMTNDSGFLKSSDKIEKPQSIWGL
GLAVIVAMVQSLGDSSSYTDILDNVIPYVFSEKADLISYYLSAPDFPSDSHDKKRPRAKK
TETSLSALKETEHTLMLMCALARHWRSWVKVMKEMDSELREKSIHLLAFISRGTHRFGES
SSRTAPLLCAPILKEELECCKKPSFLNSRNGWFALSPLCCVSKPKSSAFSANSSAFVVKG
QSTEITNPVSPTYFSDLVALEIYRIAFLLLKYLSMEAEGAAKRSEEMGFVDLAKIPELPM
PELLHGLQDQAVAIVSELCGSNKSKHMNPEIKSVCLLLLQIMEMALYLELCVLQICGIRP
VLGRVEDFSKEVKLLLKAMEGHTFIKASVTSLKHIISLVYPGLLLQTEGFL
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccctaaaaccgtcgattcctcgctttggtttgattctttcactaccaccctc
acggacctcgaaaacgcctctctctcctctgacctccctcctcacctcgcgaagaagttg
aaggagaatcacgtatggtttgtggagactgtttctctatttaagaaaccgaatgcgaat
tcacgagaggctttgaattcggagataatcaagattggatctcatgaagttactgtcaag
cctgaattgaaagttaaagctttgcacattagctcttatctgtgtttagatgaggtgcag
tcgtatattcttgttgagaggtctcttgaatgtgatgatttagcggttgattctatggtt
gaagactgtcttcatgtggtattgctccagtactacatcgagcgacaatgcttgctgaag
tgttccaggcgaattcttatgcatgctttgtatgttggaatttgctccaaagaagaaaat
gttgcaagggacgaagcagcaaagttgatttcagatgggttggaacataaattaatctct
gtcttgcaggaccttttatcttccagtcatcctgagcaaatggatgttgatcttttcact
ttgtgggctgaggagacactgattgaagacaatttggttttggacattcttttcctgctt
tattatgagtcactttgtacttgtaatggtgaaaaatggaaaaagttgtgcttgctttac
aaggggatcttatctggttcgtataactttggaaggctggcaatctcagctgaagcacta
aagtcttcttatcatgccagcacccagctcctacttattcttatagaaaccctggacctt
gaaaatcttcttcaactggtgcatgatggagtacctttcagacagggtccttctgtgttt
tccgtgactgatatccaacagatggatgtgttaatatctagttttgttacgcttggaacg
agagaagctggcccactaattcttgcatgggcagtatgtctctgtctaatttcatcactt
cctggaagtgaggaaaatagtgtactaatggaaattgatcatgttggctatgttcgtcaa
gcctttgaaggtgcatcgctgagtatttttgtcgacgttcttgaaagtgatttgttgaag
gaatcagatggacctgttgctggttatcgaagtgtcttgagaacctttatttctgcattc
attgcatcttatgagattaatcttcagttagaggacagcaccctcagtcttatactggat
atcctttgtaaaatatatcggggagaggagtcactttgtattcagttttgggacaaggaa
agttttattgatggtcctattcggtgtcttctttgcaacttggaaggtgtatttcccttc
aggactgcagaatttgttcgtcttctatcagccctttgtgaaggaagttggccagcagaa
tgtgtgtataactttcttgataaatatgttggtgtatcttccttgtttgaaattactagc
gagtccctggttgacagcgcctctcaggcagttgaaactcaactgccactgcatgttcct
ggggcagacagtttaatcattcctagtaaaactcgtggacatgttttaaaagttattgat
gggaatactgctcttgtacgttgggagtatgcacaatcaggggtgcttgtcttgctcctg
cgcttggtcaatgagctttatctggagagcaacaaggaagtttttcttacttttgaccta
ctgagccgactagtgtcttttaacacggccataacttttacaatgatggaaatcggcaac
acattttatcttcaagccgcaggagtgaatgagcagatggaaaagaagttttgggtagtt
gacgtcatttgtgctgtgataaaaaaatcgtcttctaattctggcaatgctgcagtaatg
tccatgggtgtcagtattttagcaagcatgttgacatgtgctccatctcatattgctgct
gttgtcctgaaagcaaatatatttgatgcgacttggaagacaagtacctttgaagttggc
tgtgatggcccatcaagtggatcgtggttgctttctggaaaactggtaaaaatgctatta
ctagactctgagcaaaatgattatgacaaaccattaactatatcagtgctggattttacc
atgcagctagtggaggcaagattagagaatgatctggttctggccttggtcgttttctct
ctgcagtatattctcgttaatcatgagtactggaaatacaaggtgaagcatgttagatgg
aaagtaacactgaaggtactggaagtgatgaaagcatgcatcacatcagtctcattctct
gaaaaattggccctggtaatccgtgatatgttactcaatgattcttccatccacaatgca
ctctttcatcttgcttgcacaaccaagcaaaccttagagaatctttatgtcagccgtctt
gttgaactggaggagattgaagggtgtcagcttgctattagctctgctttggatattata
tatatgatgctctccaaattttgtaaggatatctcgccgaatcttccggtctttcaccta
tcagtgctgtcatctactatgaaaccaatccctgttgttgcggctgctgtatctttgata
tcatattctcggtctcctgcagtacaggttggtgctgctaaggtgttatctatgttgttt
acaacagcagattatatgcaaccatatttgtctggcaatgtatgctttggtttggatgat
aagcagatcgcagatatgaggcattttgttaaaagcacattagttaagcagttggaatgg
aatgaagatttatttgttgctacagtcaatctgcttacttatgcagctcgttatcagcct
gcttatcttcttgctattttttccctaaaagaggatacagaggtccagttgagtaatggt
ggtggcacaaagcaggctataaatgaactttcaaatggttcactgtgttccaagaaatca
agtctgttagatgggcttatgcaatatgttgaaagatcaaacgaatttattgacagcaat
ccccgcgtactgttcactgttcttgatttcctcaaggcactatggcaaggggctgttcat
tatatatctatattggagtgcttgaagagctctggaaagttctggaaacagttgtccaat
tgtatctcatcagatgctcgctcgataacatcaccttttgagaatgtcgccgaaactcag
tctcaaagcttggcattaaaatatcaatgtcaatctgctatattggaaatgatggcacat
gacatgttcctgaagaagaagttagtacatgctgagtctgtcttaaaagaagtgtctgaa
ttggagagaaataataaggcatcaagcacagaaaaatcaaaatcagtaaatgattgtgag
ttgagagatatcttgtcaagctggtggaagagaccgatttttggcaatctgatcaattta
tatgcttcttgtgaatatgacaatgaaatatctaatcgtgcaaaggtcgctgccagtttg
ttcattgtccatgcaatggggaaattagtgattggtaatgcaggaagtttatcaatatca
ttggttgagaagatccagatcacttttaaacatttgagttgtcagcttgccttttctgaa
ttgttggcacaatactctcagcagggttacagtgaaggaaaggaactaaaaggtctgatc
ctcaacgatctctatcatcatctacaaggagagctagaaggtcgtaaaattggtcctgga
ccgtttaaggaactctgtcagtatctggtggaatcaaactgtttgctaagctatcaatac
aagtacggtggcgatcattatggaaacaccaaagatattcacttgtatgaccttatgcgc
atacgatcagatttgggattaaatatgtgggattatacagattggaaagattcaaaagca
attgcacaaactatgctggagtgcttccaggatgcaaattcaatggttttactagcttct
tcaaagctttctgcactgaaagcattgctaactgccctgattatgtgggaagataattca
ccagagaataagggcactactgaggggaagattcctgaccaactctgcttttcatgcatc
gacaacatatgcaaatcttttcgcaccacagtggaatcgctagctccagttctggatgcc
tctgaagagattcttgatttccttgctgcactagcagaattaattctacatctcatgaaa
tctgcgcagagcaacctatctttatccatttgtatacttgtcttgaaaacatcaggttct
ggcctcaaattgctgggtgatttcaggtcatctgctactggggttaaaaaaacaatgaag
cttctgctcatgctgcttcttttcactttggagattagtaatacttcagataaggaatct
gaagactttgctgaggtttcaaatggttgtctggggcttttgcctaccctgtgcaattgc
atcacagctactgagcattcttccctctccttggctaccattgacttagtactgacaagt
tttttgacacctaacacttggttccccatcatacagaaacatctccaattacctcatgtc
attctgaaagttcatgataaaagttctttctcatctgttccaattacattgaagttcctt
ctgactctggcacgtgtgagaggaggtgctgaaatgctccttagtgctgatttcttctct
tctcttagagctttgtttgcagactcatcagatgttgggccttccacagttatgaccaat
gatagtggcttcctaaagtcttctgacaaaatagaaaagcctcaatctatttggggcctt
ggcttggcagtgatcgtagctatggttcaatctttaggagacagttcttcttacaccgat
attctggacaacgtgataccttatgttttttcagagaaagctgatctgatttcttattat
ctcagtgcacctgactttccatctgatagtcatgacaagaaaagaccacgggcgaaaaag
acagagacttctcttagtgctctaaaagaaacagagcatactctcatgttgatgtgtgcg
ctagctagacattggaggtcatgggttaaggtcatgaaagaaatggattcagagctgcgg
gagaaaagtattcatttattagcctttattagccgaggaactcatcgctttggagaatct
tccagcagaactgcccccctcttatgcgctcctatccttaaagaggagttagagtgctgc
aagaaaccatcatttctaaacagcaggaatggatggtttgctctttcacctctctgttgt
gtgtcaaagcccaagtcttctgctttctcagccaacagtagtgcatttgtagtcaaggga
cagtcaactgaaattaccaatccagtttctccaacatatttttcagacttggttgccctg
gagatctacaggattgcttttcttctcttgaaatatctctctatggaagcagaaggtgct
gctaaaaggtccgaggaaatgggatttgttgatcttgctaagattcctgagctgccgatg
ccagagctattgcatggcttgcaggatcaagcagttgctattgtttctgaactgtgtggt
tcaaacaaatcaaagcacatgaatcctgaaatcaaatcagtctgtctcttactactacaa
ataatggagatggccctgtatttggagctctgcgttttacagatttgtggcataagacct
gtattaggtcgcgtggaggatttttcaaaggaagtgaaattgttattaaaagccatggaa
gggcatacgttcataaaagcatcagtgacatccttgaaacacataatatctcttgtctat
cctggattgttgttacagaccgaaggtttcctgtga
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integrated database retrieval system
