KEGG   Populus trichocarpa (black cottonwood): 7472494
Entry
7472494           CDS       T01077                                 
Name
(RefSeq) uncharacterized protein LOC7472494 isoform X1
  KO
K28516  E3 ubiquitin-protein ligase RNFT2
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7472494
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    7472494
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4_3 zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-rbx1 zf-RING_5 Prok-RING_4 zf-RING_6 zf-C3HC4_4 zf-RING_16 zf-ANAPC11 zf-RING_10 zf-Nse Sina_RING
Other DBs
NCBI-GeneID: 7472494
NCBI-ProteinID: XP_024443385
LinkDB
Position
16:14404806..14411579
AA seq 492 aa
MVRVRASSAAHTVMEGSGSISDPHRGGGGNSNSSSSLTSSSRWYGMLSASSIIQAPISSL
LEYSGLLRTTRSNHQENESLIPGGLGGGGHGSSRLDDSSASVVPNNGEVSIRIIGAGEHE
RDGSGGLVVGQVGGAQNEVLGQQQMMGADALQGDLRSDRGGGDAADGAGGQQSSSVSGDG
EAADEAGGNGRDSTYQRYDIQQVARWIEQVLPFSLLLLVVFIRQHLQGIAGFFVTIGIAV
VMFKSNDILRKQTALKGERKISVLVGISLAFMVHVVAVYWWYQNDDLLYPLIMLPPKSIP
PFWHAIFIIMVNDTLVRQAAMAFKCVLLIYYKNSRGRNYRRQGQMLTLVEYLILLYRALL
PAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSFVEKVQSFFSALKALSRKEVHYGAHAT
SEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSF
GDGSTSLLFQIF
NT seq 1479 nt   +upstreamnt  +downstreamnt
atggttagggttagggcatcatctgctgctcatacggtgatggaaggttcagggagtatc
tctgatccgcacagaggtggaggtggaaatagtaatagtagcagcagcttgacttcttct
tcgaggtggtatggcatgctatcggcttctagtattattcaagcgcccatttcttctttg
ttagagtattctggtcttttaagaacgactcgttcgaatcatcaagaaaatgagtctttg
attcctggtggtcttggtggagggggacatggttctagtagacttgatgattcgtcggct
tcagtggtgcctaataatggagaggtttccattaggataattggggcgggagagcatgag
agggacggttctggtggattggttgttggacaagtaggtggggcacaaaatgaggtgttg
ggacagcagcaaatgatgggtgcggatgctcttcagggtgatttgaggagtgatcgtgga
ggaggagatgcagctgatggcgctggtggtcagcagagttcaagtgtgagtggggatggg
gaggctgcagatgaggctgggggtaatggaagggattcaacttaccagagatatgatatt
cagcaagttgctaggtggattgagcaagtgcttcctttttccttgcttctattggttgtc
ttcattcgccagcatttgcaaggaattgcaggtttctttgttacaattggaattgctgtt
gtcatgttcaagtctaatgatattctacgaaaacaaacagctctgaagggagagagaaaa
atctctgtgctggttggcatctcactcgcattcatggtccatgtggttgctgtttactgg
tggtatcaaaatgatgatcttctgtacccattaatcatgcttcctcccaagtctattcct
cctttctggcatgccattttcatcatcatggtgaatgatactttggtccgacaggcagca
atggcattcaaatgtgttctgttaatttattacaagaacagtagaggccgaaattaccgc
aggcagggtcaaatgcttactttggttgagtatctgattctgctgtaccgtgccttgttg
cctgcaccagtctggtaccgtttctttttaaacaaagaatatgggagcctcttttcatca
ctaatgactgggttgtatctaactttcaagctcacttcttttgttgagaaggtgcaatcc
ttcttttctgctttgaaggcgctatcacgtaaagaggtgcactatggggcacatgcaaca
tcagagcaggtcaatgcagcaggagatctgtgtgccatatgccaggaaaagatgcatgct
cctatactacttcgatgcaaacacatcttttgtgaggattgtgtatcagaatggtttgag
agggaaaggacatgccccttgtgcagggctttggtcaaacctgcagatctcagatcattt
ggtgatggttcaactagtttattattccagatattctaa

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