Populus trichocarpa (black cottonwood): 7472516
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Entry
7472516 CDS
T01077
Name
(RefSeq) la-related protein 6B isoform X1
KO
K15191
La-related protein 7
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7472516
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
7SK RNP complex
7472516
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Ortholog
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GFIT
Motif
Pfam:
La
RRM_1
Pinin_SDK_N
PAM2
HENMT1_C
Motif
Other DBs
NCBI-GeneID:
7472516
NCBI-ProteinID:
XP_002323712
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Position
17:complement(549648..555941)
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AA seq
483 aa
AA seq
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MAQQNQEEEEELVAVVESVPETLDQSPSSSDPSLSRNVSFSKLNAQAPAFVPTRPQPQPP
PRLSVIPPPPPPPAGMMHMFPPSPFHVPIHGPVPLPHVIPVPNHHHHNNHHHHHNHPNQH
QQQYVPVRKHNQLHNSKRVPQQFEEEVEVVVNKDAAASSDHAAKSDEAMNKLLNQVEYYF
SDLNLATTDHLMRFITKDPEGYVPISVVASFKKVKAVVNNNSQLATILRNSTKLVVSEDG
KKVRRQHPLTESDVEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCPPQPSGGA
SSASRSGKADGMHFSNKLHAFVEYETVEIAEKAVAELNDEGNWRSGLKVRLMLKRGAQGK
KGHDGQGHSEEDEVSAFEQMPNEKLTEDQAQQPDVHSHEHSGEDHANDKEGAQRKRNRGR
GKGRGRGQYHHNNHHSNHGGTPPSNPVLGEHLTMAKQPPGPRMPDGTRGFAMGRGKLVAV
NIA
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggcacaacaaaatcaagaagaagaagaagagttagtggctgtagtagaatctgtacct
gaaaccctagatcaatctccttcttcgtctgatccttcgctttctcgtaatgtttccttt
agtaaactcaacgcacaagctcccgcctttgtccccacgcgcccccaacctcaacctcct
ccgcgattgtccgtgatccctccccctccccctcctcccgcgggcatgatgcatatgttc
cctccgtctccgtttcacgttccgattcatggccctgttcccttgcctcacgtcatcccc
gttccgaaccaccaccaccacaacaaccaccaccaccaccataatcatcccaatcagcat
caacagcagtatgttccggttcgaaagcataatcagctgcataattctaaaagggtgccg
cagcaatttgaggaagaggttgaagtggttgtgaataaggatgcagcagcttcttcggat
catgcggctaagagtgatgaagctatgaataagctgttgaatcaggtggagtattatttc
agtgatttgaacttggccactactgatcatcttatgaggtttatcaccaaggatcctgaa
ggatatgtgccaatatctgttgttgcttcctttaagaaggttaaagctgtcgtaaacaat
aattctcagcttgctaccattctgcggaactcaacaaagcttgtagttagtgaagatgga
aagaaagtaagacgccagcatcccttaactgagtcagatgttgaggagttgcaatctcgt
atagttgttgctgaaaatttacccgaggatcattgccaccaaaacctcatgaagatcttt
tctgctgttgggagtgtgaagactattcgcacctgtccacctcaaccttctggtggagct
tcttcagcatctagatctggaaaagctgatgggatgcatttcagtaacaagttgcatgca
tttgtggaatatgagactgtcgagattgctgagaaagcagttgctgagctaaatgatgag
ggaaactggaggagtggtcttaaggttcggttaatgctcaagcgtggggcacaaggaaag
aaggggcatgatggtcaagggcattctgaggaagatgaggtttctgcttttgagcaaatg
ccgaatgaaaagctgacagaagatcaagcccagcagcctgatgtccattcacatgagcat
tctggagaggatcatgccaatgacaaggaaggtgcacagcgaaagcggaaccgggggcgg
ggcaagggccgtgggcgaggtcaataccatcacaataaccaccacagtaaccacggggga
actcccccttcaaatccagttcttggtgagcatctgacaatggctaagcaaccacctggg
ccccgaatgcccgatggcacgagaggatttgcaatgggtcgagggaaactagttgctgtg
aatatcgcatga
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