Populus trichocarpa (black cottonwood): 7472609
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Entry
7472609 CDS
T01077
Name
(RefSeq) FACT complex subunit SSRP1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7472609
03036 Chromosome and associated proteins [BR:
pop03036
]
7472609
Transcription factors [BR:
pop03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
7472609
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
7472609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box
HMG_box_2
HMG_WDHD1
CHDNT
CDC45
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
7472609
NCBI-ProteinID:
XP_024456015
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All DBs
Position
4:11994888..12000135
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AA seq
641 aa
AA seq
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MTDGHLFNNIFLGGRGGTNPGHLKISPGGILWKKQGGGKAVEVDRADILGVTWMKVPRTN
QLSVLIKGGPWYKFTGFRDQDLSTLTNFFQSHGITPEEKQLSVSGRNWGEVDLNGNMLTF
LVGSKQAFEVSLADVSQTQMQGKNDVILEFHVDDTTGANEKDSLMELSFHIPNNNTQYIG
DENHPPAQVFRDLIVQKADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAND
FKIQYSSVVRLFLLPKFNQPHTFVVVTLDPPIRKGQTLYPHIVLQFDTDFVVQSNLSMSE
DLLYTKYKDKLEPSYKGLIHEVFTTILRGLSSAKVTRPGKFRSCQDGYAVKSSLKAEDGV
LYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQR
NEYHNLFDFISGKGMKIMNLGDMQTAKGVAAVLQNDDDDAVDPHLARIRNEAGDDESDEE
DEDFVLGKDDGGSPTDDSGEEESDASESGDEKENPGKKDFKREVSSSKAVTKRKSRDGEE
SQKKRKPKKKKDPNAPKRSKSAYVFFSQMERENVKKSNPGIVFGEITKALADKWNAMSAE
EKEPYEEMARDDKQRYKSQVNDYKNKNPQPMMVDSGYESDS
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgacggacggtcatctcttcaataatatctttctcggaggccgtggaggcactaaccct
ggacaccttaagatatctccaggggggattctatggaagaaacaagggggtggtaaggca
gttgaagttgatagagctgacattcttggagtgacatggatgaaggtcccaaggacaaat
caactcagtgttctaattaaaggtggaccttggtacaagtttactggatttcgtgatcag
gacttatctaccttgaccaattttttccaaagccatggaataacaccagaagagaagcag
ctatctgtcagtggtcgtaactggggagaagttgacttaaatggaaatatgcttacattt
ttggttggttcgaagcaagcgtttgaggtatctttagcagatgtttcacaaacacagatg
caagggaaaaatgatgtcatcttggagttccatgtggatgatactactggagcaaatgag
aaagattcgttgatggagctaagttttcacatacctaataacaatacccaatatattggt
gatgaaaatcatcctcctgctcaggttttccgtgacctaattgtgcaaaaggcagatgtt
ggtgctggaggtgaagaagctgttgttacatttgagggcattgcaatcctcacaccaagg
ggtcggtacagtgttgaacttcatttgtctttcctgcggcttcaaggacaggctaatgat
ttcaaaatccagtatagcagtgttgtccgcctctttttgcttccaaagtttaaccagcca
cacacctttgttgtcgtgactcttgatccacctatccgtaaagggcaaactctatacccg
catatcgtgttgcagttcgacactgactttgtagttcaaagcaacttgtcaatgagtgaa
gatcttttgtacacaaagtacaaggacaagttggagccatcttacaagggacttattcat
gaagtgttcaccactatattgcgtggattgtctagtgccaaagttactagaccaggaaaa
ttccgtagctgtcaagatggctatgctgtgaagtcatcgctgaaagctgaagatggtgtc
ctgtacccacttgagaagagcttcttcttcttacccaaacctccaaccctcattcttcat
gaggagattgactatgttgaatttgagaggcatgcagctggtggctcaaatatgcattac
tttgatcttcttataagacttaaaacggaacaagaacatcttttccgtaacatccagagg
aatgaatatcataatctttttgacttcataagtgggaagggcatgaaaattatgaacctg
ggagatatgcagaccgcaaaaggagtggctgctgttcttcagaatgatgatgatgatgct
gttgatccacatcttgcacgcattagaaatgaagctggtgatgacgagagcgatgaagag
gatgaagattttgtcctcgggaaggatgatggaggttctcctactgatgattctggagag
gaagaatctgatgccagtgaaagtggagatgagaaagagaaccctggaaaaaaggatttt
aaaagggaggtttcatcttccaaggctgttacaaagaggaaaagcagagatggagaggaa
agccaaaagaagagaaaaccaaaaaagaagaaggatcccaatgcaccgaagagatcaaaa
tctgcctacgtgttcttctcgcaaatggaaagggagaatgtgaagaaaagtaacccagga
attgtgtttggggagattacaaaagcacttgcggacaagtggaatgctatgtcagcggag
gagaaagaaccgtacgaagaaatggctcgagatgataaacaacggtataaatcgcaagtc
aatgattacaagaacaagaacccacagccaatgatggtagactctggatacgagtctgac
agttga
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