Populus trichocarpa (black cottonwood): 7472610
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Entry
7472610 CDS
T01077
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
7472610
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
7472610
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Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
7472610
NCBI-ProteinID:
XP_024455152
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Position
4:complement(12003816..12006136)
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AA seq
475 aa
AA seq
DB search
MAVGKAMLIFVFTLATLIPSLLADIGIFDDVWQKRAQDAKKMTLEAYVPDPEEATDAFNV
EVNKYSLAKNSSSLYGAFGSTNITNLDLDDDDNDNDNDADFEQFANSTRRNLRQGRKKYA
GPCQVTNPIDRCWRCQRNWAKNRKQLAKCALGFGRRTTGGMAGRIYVVTDSSDNNVMKPK
PGTLRHAVIQKEPLWIIFSKNMNIKLSKELIMSSHKTIDGRGHHVHISYGGGITIQFIHN
VIIHGIRIHHIIATSGGNIRDSVDHYGIRTNSDGDGISIFGSTDVWIDHVSMSRCTDGLI
DAIMGSTAITISNCHFTHHNDAILLGASDSYSGDHLMQVTVAFNHFGQGLVQRMPRCRWG
FFHVVNNDYTHWRLYAIGGSKHPTIISQGNRFIAPPESHLKQVTKRDYATKGEWSKWTWR
SENDLMMNGAFFVQSGQPRTKKPNRKFMIKAKPGAVATRMTRFAGALDCKPGRKC
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgggtaaggccatgctgatctttgtttttactcttgcaacattgattccaagc
ctgctggcagacattggcattttcgacgatgtgtggcaaaaacgagcgcaggatgctaag
aagatgacattggaagcctacgtacccgacccggaagaggcaaccgatgctttcaacgtt
gaagttaacaaatactctcttgcaaagaatagcagcagcctttatggtgcttttgggagc
acaaacatcactaatttggaccttgatgatgatgataacgataacgataacgatgccgat
tttgaacagttcgctaacagcactagaaggaacctgaggcaagggaggaaaaaatacgca
ggtccatgccaggtgaccaacccaattgacaggtgctggaggtgccaaaggaactgggca
aaaaaccgcaagcagttagcaaaatgtgcgcttggttttgggcgtaggactactggagga
atggccggaaggatatatgttgtgacagatagctcggacaacaatgttatgaagccaaaa
cctgggactttgcgtcatgctgtgatccaaaaggagccattgtggatcatattttcaaag
aacatgaacattaagttgtcgaaagagttgataatgtctagccataagacgattgatggg
cgtgggcaccatgtacacatctcttatggaggtggcattacaatacaattcatccataac
gtaatcattcatggaattcgcattcatcacattattgctactagcggtgggaatattagg
gactccgtggaccattatggaatcaggaccaacagtgatggagatggaatttccatcttc
ggctccaccgatgtctggatcgatcacgtttccatgtctcgctgcaccgatggactcata
gatgcaattatgggatccactgcaattaccatttccaattgccatttcacccaccacaat
gatgccatcttgctgggagcaagtgatagctactcaggcgatcatcttatgcaagtcaca
gttgcattcaatcattttggccaggggcttgtacagagaatgccaagatgcagatggggt
ttcttccatgttgttaataatgactacactcattggcgcctgtatgctattggtggcagc
aaacatcctaccattatcagccagggtaaccgcttcatcgcaccacctgagagtcatcta
aaacaggtgaccaagagggactatgcaacgaagggagaatggagtaaatggacatggaga
tcagagaacgatctaatgatgaatggagccttctttgttcaatctggccagccgagaacc
aagaaaccgaacaggaagttcatgatcaaagccaaacccggtgcagttgctacaaggatg
actcgctttgctggggcacttgattgcaaaccaggtagaaaatgctag
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