Populus trichocarpa (black cottonwood): 7472638
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Entry
7472638 CDS
T01077
Name
(RefSeq) RNA-binding protein 1
KO
K14411
RNA-binding protein Musashi
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7472638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7472638
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
7472638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
PHM7_cyt
SET1_RBD
RRM_Nup35
Pro_isomerase
HSP90
Motif
Other DBs
NCBI-GeneID:
7472638
NCBI-ProteinID:
XP_024450285
LinkDB
All DBs
Position
2:complement(8777304..8779128)
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AA seq
331 aa
AA seq
DB search
MNIDEAKLFVGGISRETSEETLRNYFSKYGVVSHSLTAKDKITKFPRGFGFVVFSDPSSA
ARALQDNHVILGRTVEVKKALPKIEKHQQQRQHHPHGNQEASNGLGMNSDNSTSAKNNRT
KKIFVGGLASSLTEEQFKNYFEQFGRTVDVVVMQDSLTNRPRGFGFVTFDSEESVDKVLL
IGSHELNGKRVEVKKAVPKDRINGHIVRSGSNGFIGNGPQLANHPFYGQGYDPCYTSFPV
YNDVHGHFYGMSFYGSVYPMVGYGRPGLEVAPMAPMLGAGLFPYSNACLYPAYTHNMSSI
RGMEIGGHNRIVEAGVNGEESGSWQQWTRSI
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgacgaggcgaagctttttgtgggaggtatatctcgtgagacaagcgaagaa
actctaagaaattacttcagcaagtacggtgtcgtttcgcattctcttactgccaaggac
aaaatcactaaatttccaagaggatttggttttgttgttttctctgatccttcttctgct
gctagggctcttcaagataatcatgttattcttgggagaacggtagaagtgaagaaagca
ctacctaaaattgaaaaacaccagcagcaacggcaacaccacccccacggtaatcaggaa
gctagcaacggattgggtatgaatagtgataatagtaccagcgctaaaaacaataggacc
aagaagatctttgtgggaggtttagcatctagtctaactgaagaacagttcaaaaattac
tttgaacagtttgggaggacagtagatgtagttgtgatgcaagatagtttaaccaacagg
ccaaggggcttcggatttgtcacctttgattctgaggaatccgttgacaaggttttgctg
atcggttctcatgagttgaatggtaagagagtggaggttaagaaggctgtgccgaaagat
agaattaatggtcatattgttaggagtggttcaaatgggttcattggtaatggtcctcaa
cttgcaaatcaccctttctatggtcagggatatgacccatgctacacttctttcccggtg
tataatgatgttcatggtcatttttatggaatgagtttttatgggagtgtataccctatg
gtaggatatggaagacctggtttggaggttgcaccaatggctcctatgcttggagctgga
ctgtttccttacagcaatgcctgtctttatcctgcttatacgcataacatgagtagcatc
aggggtatggaaattggtgggcataatcggattgttgaggctggtgtgaatggtgaagaa
tctggttcgtggcagcaatggacacgttccatctga
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integrated database retrieval system