Populus trichocarpa (black cottonwood): 7472741
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Entry
7472741 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7472741 isoform X1
KO
K24738
rabconnectin-3b
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
7472741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7472741
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
7472741
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
EIF3I
DSE1_N
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR41
Beta-prop_TEP1_C
PAC11
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
7472741
NCBI-ProteinID:
XP_024440000
LinkDB
All DBs
Position
1:7863048..7871325
Genome browser
AA seq
1522 aa
AA seq
DB search
MKCRSVACIWPDTPPSHKVTASASLNHPPTLYTGGSDGSILCWNLSSSDSNTEIKPVAML
CGHAAPIADLSICCPMVVTGEDTKTKCSSNGDGSSASDTYDALISACKFGVLCVWSRGSG
HCRRRRKLPPWVGSPCFVRTLPTSSRYVCIGCCFIDAAHSSDRHSIDSLEGGEVSVDKGC
LPGKHPKSTVVIVDTYSLTIVQSVFHGNLSIGRLDFMDVVLLGEDGEKHSVFIADSSGKV
ELVPILKESNPVGDGGSGLRKSSQLEVVNWGNGSSKEGQVVSSATRGNLIALVLKTRCIF
RLLTSETTIGETSFAEDILCVEDHFAQSHVLGGMFLEIGEAGEMQSAQHDNFCGHFAVWN
SRGSAIVYIVSYLNNVFKSETLWEIPAASYPADVRLLFSFIQLNNYLLRIESVCFDDEEP
LQWKPHVTIWSLCRKHDNHGKSSQQRKMLGESDFFADWVSNSSLLGINNQGVGKMRITSA
QSSVPNSRTENNKHADESFGFVCNGKTVSSSMVVSENHFFPYAVVYGFFNGEIEVVRFDM
LLEPDSHGESPRNDVDSPVSRQYFSGHTGAVLCLAAHRMLGAARGWSFSHVLVSGSMDCT
VRIWDLDTGNLITVMHQHIASVRQIIFPSARTERPWGDCFLSVGEDSCVALTSLETLRVE
RMFPGHPSYLEKVVWDGARGYIACLCQSHLGLSDTVDALYIWDVKTGARERVLHGTASHS
MFDHFCKEISVHSISGSILNGNTSVSSLLLPVIEDETFSQSHSKLLEKKVSSPRMMSNMK
NAMDPTASQGQVKKGILPTTPSFLQMNKHAIGCTCPFPGIAALSFDLASLMFPFQKHEPA
ANGVVKQENIDVKEQGTSTPRTQDMNFDGGSDKNGTSTDTIEEHDWIRSLEEYSLRFSLS
FLHLWNLDSELDKLLVTEMKLNRPENLIIASGLQGDKGSLTLSFPGLSSILELWKSSSEF
CAMRSLTMVSIAQRMISLSRCSSPVTSALAAFYTRSFADKIPDIKPPLLQLLVSFWQDES
EHVRMAARTLFHCAASRSIPLPLCGKKMNAHRKLVRSLSEIRDNEAEVSNVGGTSTNDLA
SDMSPEPQATPQAVEFPDKSLEKQGITEAARSKILDWLESFEMQDWISCVGGTSQDAMTS
HVIVAAALAVWYPSLVKPSIATLVAHPLIKLVMDMNETYSSTAAELLAEGMESTWEACIS
SEIPRLIGDIFYQIECVSGQSANSAGHHSSVPSFIRETLVGILFPSLAMADIPGFLTVIE
GQIWSTASDSPVHLVSLTTLIRVVRGSPRHLAQYLDKVVSFILHTMDPGNSIMRKTCLQS
SMTALKEMVQAFPMVALNDTSTRLAVGDAIGMINNATISVYDMQSVTKIKVLDACGPPGL
PNLLSGASEMAVITVISALSFAPDGEGLVAFSEHGLMIRWWSLGSVWWEKLSRNLAPVQC
TKLIFVPPWEGFSPNSSRSSIMASILGHDNQANLQEKARDSTYADNLKLLIHNLDLSYQL
QWVGERKVLLSRHGLELGAFPL
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgccgatccgtggcgtgtatatggccggacacacctccatctcacaaagtcacc
gcctccgcctcacttaaccacccgccaaccctttacactggtggatccgatggctccatt
ctctgctggaacctctcttcttccgattccaacacggaaattaaaccggttgcaatgctg
tgtggccacgctgcaccgatagctgatcttagcatttgttgtcccatggtggtcacggga
gaagataccaaaacgaaatgttcgagtaatggtgatggaagttctgcttccgatacttat
gatgcgttaattagtgcgtgtaaatttggtgtattgtgtgtttggagtagaggaagtgga
cactgccggcgtagaaggaaactccccccttgggttggaagtccgtgttttgttcggaca
ttgcctacgagttcgagatatgtgtgtatagggtgctgttttattgatgctgcgcattca
tcagatcgtcattctattgattctcttgaagggggtgaggtttcagtggataaaggttgt
ctgcctgggaaacatccgaagagtactgttgtgattgttgatacgtatagtctcactatt
gtacagtctgtttttcatgggaatttatcaattgggcgattggattttatggatgtagtt
ttgttgggtgaagatggggagaagcattctgtttttatcgctgattcatctggtaaggtg
gaattggttccgatcttgaaggagtcaaatccagttggtgatggtgggagtggcttgcgt
aagagttctcagctggaagtggttaattggggcaatggttcgagtaaagaaggacaggtc
gtgtcaagtgcaactcgtgggaaccttattgctctagtgttaaaaacacgttgcatattt
aggctattgaccagcgaaactacaattggagagacttcttttgctgaagatatcctttgt
gtcgaggaccattttgcccaatcacatgttttgggaggcatgtttcttgaaattggtgaa
gctggtgaaatgcagagtgcccagcacgataatttctgtggacattttgctgtctggaat
agtagaggttctgctattgtatatattgtatcatatctgaacaatgtatttaaatctgaa
actctctgggagattcctgctgcttcttatcctgctgatgtgagattgttgttttctttc
attcagttgaacaattatcttcttcgaattgaatctgtttgctttgatgacgaagagcct
ttacagtggaaaccccatgtcacaatctggtctctatgtcgaaagcatgataaccatgga
aagtcatcccaacaacgcaaaatgcttggtgaaagcgatttttttgctgattgggtctca
aactctagcctccttggaattaataaccaaggtgtcgggaaaatgaggataacttctgct
caaagctctgttccaaattcaagaactgaaaataataaacatgctgatgaaagttttggt
tttgtgtgcaacggaaaaactgtatcctcttccatggttgtttctgaaaatcattttttc
ccttatgctgttgtatatggcttctttaatggtgaaatagaagttgtacgatttgatatg
cttcttgaaccagattctcacggtgaaagtccacgtaatgatgtagattctcctgtatcc
aggcaatatttttcagggcacacaggcgctgtgctttgtttggcagcgcatcggatgttg
ggtgctgccagaggatggagtttcagtcatgttttagtttctggaagcatggactgcaca
gttcgcatctgggatcttgacactggaaacctcattactgtgatgcaccaacatatagct
tcagtgcgtcaaataatctttccctcagcacggacagaacgtccttggggtgattgcttt
ctctctgtcggggaggactcatgtgttgctctaacttctcttgaaactttgcgtgtagag
agaatgtttccagggcacccaagctatcttgaaaaggttgtgtgggatggtgcaagaggt
tacattgcatgtctctgccagagccatttaggattatctgatactgtcgatgctctgtac
atatgggatgtaaaaaccggtgcccgagagcgcgttcttcacggaacagcctctcactca
atgttcgatcatttttgtaaagaaatcagtgtgcattctatatctggttctatattgaat
ggaaacacttcagtgtcctcattgcttcttccagtaattgaagatgaaaccttctctcaa
tcccactcaaagcttctggagaagaaggtcagctcaccaagaatgatgtcaaacatgaaa
aatgcaatggaccccactgcttcccaaggacaggtcaagaaaggaatattaccaaccacg
ccatctttcctacaaatgaacaagcatgccattggatgcacttgcccgttccctgggatt
gcagccttgagttttgaccttgcgtccttgatgtttccttttcagaaacatgagccggca
gctaatggtgttgttaagcaagagaatatagatgtcaaggaacagggaactagcacccca
agaactcaggatatgaactttgatggtggttctgataagaatgggacctcaactgatacc
attgaggagcatgactggattaggtcactagaagaatattcacttcgatttagcttgtca
ttcttgcatttgtggaatctggatagtgagcttgataaattgctagtaacagaaatgaag
ctaaatcggccagagaatttgatcatagcttctggtttgcaaggtgacaaggggtctttg
accctgtcatttcctggtttgagttctattcttgagctctggaaatcatcatcagagttt
tgtgccatgaggtcacttacgatggtgtccattgcccaacgcatgattagcctgtctcgc
tgcagttcaccagtcaccagtgccttagcagcattttacactcggagttttgcagacaaa
attccagatataaagccccctttactccagcttctggttagtttttggcaagatgaaagt
gaacatgtacgcatggctgcccgcactttattccattgtgctgcttcacggtctatccca
ctccctctatgtggtaaaaaaatgaatgcacacagaaaacttgtgagatctttgagtgaa
attagagacaatgaagctgaagtttcaaatgtaggagggacatctacaaatgatttggca
tctgacatgtcacctgaaccacaagcaacccctcaggctgtagaatttcctgacaagtca
ctggaaaaacagggaattactgaagcagcaagatccaaaatacttgattggctagagtca
tttgaaatgcaagactggatttcatgtgttggagggacaagtcaagatgcaatgacatct
cacgtcattgttgcagctgcattggcagtgtggtaccctagccttgtcaaaccaagtatc
gccacattggttgctcatcctttaattaagttggttatggacatgaatgaaacatatagt
tccactgcggcagagctccttgcagaaggtatggagagtacatgggaggcatgcattagt
tctgaaatacctcgcctcattggggatatattctaccagatagagtgtgtaagtggtcaa
tctgccaactctgctggacatcattcatctgtaccatctttcattcgagagactttggtt
gggatactttttccaagtttagctatggctgatataccagggtttttaactgtcatagag
ggccaaatttggtctactgcatctgattcgcctgttcatctggtatccctcacaacacta
ataagggttgtgcgtggttctccacggcacctggctcaatatcttgataaggtggttagc
ttcattttacacactatggatcctggcaactcaatcatgcgcaaaacttgtcttcaaagt
tcaatgacagcactaaaggaaatggtacaggcatttcctatggtagccctgaatgacaca
tctaccagattggctgttggcgatgcaattggaatgataaataatgctactatttcagtt
tatgacatgcaaagtgtgacaaaaataaaagtcttggatgcatgtggaccccctggtctt
ccaaatttgctttcaggagcatcagaaatggcagtgatcactgtaatatcagctttgagc
tttgcccctgatggagagggactggttgcattttctgagcatggcttgatgataagatgg
tggtcactaggatctgtgtggtgggagaaacttagtcgaaacttggctcctgtccagtgc
accaaactgatatttgtacctccatgggaaggattttcacccaattcttctaggtctagc
ataatggcaagcatattggggcatgataaccaggccaatttgcaggagaaagcccgggat
tcgacttatgcagacaatttgaaattgttaatacataatctggacctctcttaccagcta
caatgggtcggcgaacgtaaggtacttctatcaaggcatggcctggagttgggagctttt
ccattgtaa
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integrated database retrieval system
