KEGG   Populus trichocarpa (black cottonwood): 7472972
Entry
7472972           CDS       T01077                                 
Name
(RefSeq) coatomer subunit beta'-1 isoform X1
  KO
K17302  coatomer subunit beta'
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    7472972
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    7472972
Membrane trafficking [BR:pop04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    7472972
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   7472972
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st WDR55 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_HPS5 NBCH_WD40 WDR90_beta-prop_4th WD40_like Beta-prop_IFT122_1st PEP5_VPS11_N WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_SPT8 TPR_8 WD_LRWD1 HEAT_GCN1 TPR_GEMI5 TPR_2 TPR_CcmH_CycH Clathrin
Other DBs
NCBI-GeneID: 7472972
NCBI-ProteinID: XP_024445941
LinkDB
Position
1:complement(15649746..15661270)
AA seq 912 aa
MPLRLEIKRKLAQRSERVKSVDLHPTEPWILVSLYSGTVCIWNYQSQTMAKSFEVTELPV
RSAKFIARKQWVVAGADDMYIRVYNYNTMDKIKVLEAHTDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPE
LPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRIVIGYDEGTIMVKIG
REEPVASMDNSGKIIWAKHNEIQTVNIKSVGADFEVTDGERLPLAVKELGTCDLYPQILK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSADGEYAVRESTSKIKIFSKNFQ
EKKSIRPTFSAERIHGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLFWADSGDLVAI
ASDTSFYILKYNREIVSSYLDNGKPVDEQGIEDAFELLHETNERVRTGLWVGDCFIYNNS
SWRLNYCVGGEVTTMYHLDRPMYLLGYLAGQSRVYLIDKEFNVMGYTLLLSLIEYKTLVM
RGDLERASEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFELAIQLGRLEAAKE
IASEVQSESKWKQLGELAMSSGKLEMAEECMRHATDLSGLLLLYSSLGDAEGISKLGSLA
KEQGKINVAFLCLFMLGKVEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNK
VNPKAAESLADPEEYPNLFDDWQVALSVESRAAGTRGVHPPAEDYQYHADKPHITLVEAF
RNMQVEEEEPLENGDFDHESDEQNGDEHNAEEQNGEEGSQEEAVVVDADSTDGAVLVNGN
EPEEEWVLTPHH
NT seq 2739 nt   +upstreamnt  +downstreamnt
atgcctctcagactcgaaatcaagaggaaacttgctcaaagatcagagagagtaaagtca
gtcgatctacatccaactgaaccatggattttagtgagtttgtattcagggactgtgtgt
atctggaactaccagtcacagaccatggcaaagtcttttgaggtcactgaattaccagtt
aggtcagccaagtttatagcacgaaagcagtgggttgttgctggggccgatgacatgtat
attcgtgtgtacaactacaacacaatggataagataaaagttttagaggcgcatacagat
tacattagatgtgtggctgtccatcctacccttccatatgtgttgtcatcatctgatgac
atgcttataaaactttgggattgggagaagggttgggcctgtactcagatatttgagggg
cattctcattatgtgatgcaggttacttttaatcctaaagacaccaacactttcgcaagc
gcatcccttgatcgcaccataaagatatggaatcttggctctcccgacccaaatttcact
ctggatgcccatcagaaaggagtaaattgtgtcgattactttactggtggagataaacct
tatctaataactggttctgatgatcacactgcgaaggtatgggactatcaaactaaaagt
tgcgtccagactttggacggccatacacacaatgtctctgctgtatgtttccatcccgaa
cttccaataataattacaggttctgaggatgggactgttcgtatatggcattcaacaact
tacaggcttgagaacaccttgaattatggcctagaaagagtttgggctgttggatacatg
aaaggttcacgccgtattgtgattgggtatgatgaaggaaccattatggtcaagatcggc
cgagaagaacctgtagctagcatggacaatagtggaaagattatatgggccaagcacaat
gaaattcaaactgtgaacattaagagtgtgggggcagattttgaggtcactgatggtgaa
agattgcctttggctgttaaggagttgggaacatgtgatctttacccccaaatcttaaag
cacaatcccaatgggaggtttgttgttgtctgcggagatggtgagtacatcatatataca
gctttagcatggagaaacagatcatttggttctgcacttgaattcgtttggtctgctgat
ggtgaatatgctgttagagaaagtacatcaaagataaagattttcagtaaaaatttccag
gaaaagaagagcatccggccaaccttttcagctgagcgtattcacggaggaaccctgttg
gctatgtgctcaaatgatttcatttgtttctatgactgggctgaatgcaggttgattagg
agaattgatgttactgtgaagaatctcttttgggctgacagcggagatttagtggctatt
gcaagtgatacgtcattctacatcctcaaatacaatcgtgagatagtttcatcttattta
gataatggaaaacctgtagatgaacaaggtattgaggatgcatttgagcttcttcatgaa
accaatgaacgtgtcagaactggcttatgggttggggattgttttatatataacaactcc
tcctggaggcttaattattgtgttggaggcgaggtaaccactatgtatcatctggaccgt
cccatgtacttactggggtaccttgctggtcaaagtcgggtgtatttgatagacaaagaa
ttcaatgtcatggggtacactttactccttagcttaattgagtacaagactctggtgatg
cggggagatctggagagggccagtgaagttttaccttcaattcctaaagaacaccataat
agtgtggctcgtttcttggaatcacgaggcatgatagaggatgctctggaagtagctact
gaccctgattacagatttgagctagctattcagcttggtagattagaggctgcgaaggaa
attgccagtgaagtgcagagtgagtcaaagtggaaacagttgggagagttggccatgtcc
agtggaaagttggaaatggctgaggaatgcatgaggcatgcaacagacttgagtggtttg
ctgctactgtattcttccttaggagatgctgaagggatatcaaagcttggatccttggca
aaagaacaggggaagataaatgttgcattcctttgtttgttcatgttgggcaaagttgaa
gactgcctccagttgttggtggaaagcaatcggatacctgaggctgctttgatggcacga
tcttatcttcccagcaaggtttcagagattgttgcaatttggaggaaagacctgaacaag
gtcaatccaaaagctgcagaatctctggctgatcctgaagaatatccaaatttgtttgat
gattggcaagttgctttatctgtcgaatctagagctgcagggacaaggggtgtgcatcct
cccgcagaggactaccaataccatgctgataaacctcacatcaccctcgtggaggctttc
agaaacatgcaagtagaagaggaggaacctcttgaaaatggagactttgatcatgagtct
gatgaacagaatggagacgaacataatgccgaggaacagaatggcgaagaagggagccaa
gaggaagcagttgtggtggatgcagattccacagatggtgctgtacttgttaatggaaac
gaacctgaggaagagtgggtgcttacaccacatcactag

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