Populus trichocarpa (black cottonwood): 7473001
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Entry
7473001 CDS
T01077
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
7473001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7473001
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
7473001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
zf_RING_Vps8
WDR55
Beta-prop_HPS5
Beta-prop_EML_2
EIF3I
WDR90_beta-prop_4th
zf-RING_2
Beta-prop_TEP1_C
ANAPC4_WD40
zf_RING_Vps8_fungal
Beta-prop_TEP1_2nd
PEP5_VPS11_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR11_2nd
zf-C3H2C3
BUD22
Importin_rep_6
PI3K_1B_p101
Motif
Other DBs
NCBI-GeneID:
7473001
NCBI-ProteinID:
XP_002299663
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Position
1:21889804..21897658
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AA seq
950 aa
AA seq
DB search
MTPITSENGVDGDDEREEEEEDDDDEEEEEEEEEEEEEEEEPRLKYQRMGGSIPSLLSND
AASCIAVAERMIALGTLDGTVHILDFLGNQVKEFAAHTAAVNDLSFDIEGEYIGSCSDDG
TVVINSLFTDEKVLKFEYHRPMKAIALDPEYSRKMSKRFVAGGLAGQLYFNSKKWLGYRD
QVLHSGEGPIHAVKWRTSLIAWANDAGVKVYDAANDRRITFIERPRGSPRPELLLPHLVW
QDDTLLVIGWGMSVKIASIRANQQKGANGTYRDVPVSSMNQVDIVASFQTSYYISGIAPF
GDSLVVLAYIPVEEDGEKEFSSTISSRLGNAQRPEVRVVTWNNDELATDALPVHGFEHYK
AKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLEHGWHEK
ALAAVEAGQGRSELVDEVGSRYLDHLIVERKYAEAASLCSKLLRGSAPAWERWVFHFAHL
RQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPPLIYSALPVISAI
EPQLNTSSMTDALKEALAELYVIDGQYEKAFSLFADLMKPEIFDFIEKHSLHDTIREKVV
QLMLLDCKRTVPLLIQNKDLISPPEVVSQLLTASNKCDSRYFLHLYLHALFEANPHAGKD
FHDMQVELYADYDLKMLLPFLRSSQHYTLEKAYDICVKRDLLREQVFILGRMGNSKKALA
IIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGVLLEHTVGNLDPLYIVNMVP
NGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYYKEARRAICLSNEEDA
RAKRDGSRDSQAAGRTASARTMEVKSKTRGETRCCMCFDPFSIRDVSVVAFFCCHAYHMS
CLMDSMHTVSSGKGSGATSGISEYDSNDEDEETVSGVPRLRCILCTTAAS
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgactccaattacgtcggagaatggtgtcgatggcgacgacgagcgagaagaagaagag
gaagatgatgatgatgaagaagaagaagaagaagaagaagaagaagaggaggaggaggag
gaaccaagactcaagtaccaaagaatgggaggtagcataccttctcttttatccaatgat
gcggcgtcgtgtattgctgtagccgaacgcatgattgcactcggcactctagacggcacc
gttcacatcctcgatttcctcggcaaccaggttaaggaatttgcggcgcatacagcggcg
gttaatgatcttagctttgatatagaaggagaatatataggaagttgttcagacgatggc
actgttgtaattaatagtcttttcaccgacgagaaagttttgaagtttgaatatcatcgg
ccgatgaaggcaattgctttagaccctgaatattctagaaaaatgtctaaaagatttgtt
gctggtggtttagctggtcaattgtattttaactccaagaaatggctaggttaccgtgac
caggttttgcactctggggaaggtccgatacatgctgtgaagtggagaacgagtctcatt
gcgtgggctaatgatgcgggtgtgaaagtttatgatgctgctaatgatcgaagaataact
tttattgaaagaccgcgagggagtccgcgtccggagcttttgctcccgcatttagtttgg
caggatgatactctcttggttattgggtggggaatgtctgtaaaaatagcatcgataaga
gcaaatcagcaaaagggagctaatgggacatatagggatgttccggtgtctagtatgaac
caggtggatattgtggcttcttttcaaaccagctattatatttcaggaattgctccattt
ggtgattctttggttgttctagcttatattcctgtggaagaagatggagagaaggaattc
agtagcaccatttcatcaagactgggcaatgcacagagaccagaagtacgagtagttaca
tggaataatgatgaacttgcaacagatgccctacctgtgcatggttttgagcattacaag
gcgaaagactattcccttgcgcatgctcctttctcaggtagcagctatgctggtggtcaa
tgggctgctggtgatgaaccattatactatatcgtttccccgaaggatgtggtgattgca
aagcctagggatgctgaagatcatattgcgtggcttctagaacatggttggcatgaaaaa
gcgttggcagcagttgaagcaggccagggtaggagtgaactcgttgatgaggtgggatcc
agatatcttgatcatttgatcgtggaaaggaaatatgctgaagctgcatctttgtgttcc
aaattgctgcgagggtctgctccagcatgggaaagatgggttttccattttgctcatttg
cgtcagcttcctgtgttggtcccttacatgccaacagaaaaccctagacttcgtgatact
gcttatgaggttgctcttgtagctctggcaacaaatccatcttttcataaagatctcttg
tcaactgttaaatcttggccacctttgatttattctgcattgcctgttatatctgctata
gaacctcagctaaatacttcttctatgacggatgcactcaaggaggcactagcagagtta
tatgtaattgatgggcaatatgagaaagccttttcactttttgctgatctcatgaagcca
gagatatttgatttcattgaaaagcacagcttacatgataccatacgtgaaaaggttgtc
caactgatgttgcttgattgcaaacgcacagttcctctattgatccagaacaaagactta
atttctccacctgaagttgtctcgcaactgttgactgccagcaataagtgtgattcaaga
tatttcctacacttgtatcttcatgcattatttgaagcaaatccacatgcaggaaaggat
tttcatgatatgcaagtagagctttatgcagattatgatctgaaaatgctactacctttt
ctccggagcagccaacattacacccttgagaaggcatatgacatttgtgtcaaaagagat
cttttaagagagcaagtcttcatacttggaagaatgggaaactcaaaaaaggcgctagct
atcatcataaataaattaggggacattgaagaggctgttgaatttgtaaccatgcagcat
gatgatgagctatgggaagaattaattaagcaatgtcttcacaaacctgaaatggtgggg
gtattgttggagcacactgttggcaatcttgatcctttatacattgtaaatatggtgccc
aatggcttggaaataccccgacttagggatcgactagtaaaaattatcaccgattacaga
actgaaacatctctgagacatgggtgcaatgatattcttaaggctgattgtgtaaatctc
ttggtcaaatactacaaagaagcgagaagggcaatttgcttaagcaacgaagaagatgct
cgagcaaaaagggatggcagtagggattcacaagcagctgggagaacagcaagtgcaaga
accatggaggttaagtcaaaaaccaggggagaaacaagatgttgcatgtgttttgatccc
ttctctatacgagatgtatcagttgtcgcattcttttgctgtcatgcttatcacatgtct
tgtcttatggattctatgcacactgttagtagcggaaaagggagtggagccacttctggg
atatcggaatacgatagcaatgacgaggatgaggaaaccgtttctggtgttcctcggctg
agatgtatcttatgtactactgctgctagttga
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