Populus trichocarpa (black cottonwood): 7473161
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Entry
7473161 CDS
T01077
Name
(RefSeq) plant-specific TFIIB-related protein 1
KO
K03124
transcription initiation factor TFIIB
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7473161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7473161
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
7473161
Prokaryotic type
Archaeal type
TFB
7473161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Cyclin_C
Zn_Ribbon_TF
HTH_Mga
Motif
Other DBs
NCBI-GeneID:
7473161
NCBI-ProteinID:
XP_002310216
UniProt:
B9HEV3
LinkDB
All DBs
Position
7:complement(2112466..2116670)
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AA seq
514 aa
AA seq
DB search
MKCPYCSATQGRCATTTTTNRCITECTSCGRVVEERQFHPHHLFHLRAQDTPLCLVTSDL
PTLHHHHQNEEDPFEPTGFITSFSTWSLEPNPVSLRSSLSFSGHLAELERTIELSASTPA
SSSNVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALV
QAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQ
LNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV
TLRKVYKELLENWGDLLPKNYTPAVPPEKAFPTTTITSGRSSAPKIDPVELVSSSSEKDK
QLESKSNKPSELARGKEDAENNGNSRGIQPPPWQNFRQPWLQFVTSGVRMVGDTNQNLAR
VDINESQPRRQEFEEKADKQKMDKDPTASAWPNQLSSSPASGASTISWPFRSPTLSGPSP
IVQPPPKLTPGYAELKGIGSQNGGKTGNNSGDNK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgcccctactgctccgccacacaaggccgctgcgccacaacaacaaccacaaac
cgctgcataaccgagtgcacatcttgcggccgtgttgtagaagaacgccaatttcaccct
caccacctcttccacctccgtgcacaagacacccctctttgcctcgtaacctccgatctc
ccgacccttcaccaccaccaccaaaacgaagaagacccatttgagcccacagggtttata
acctccttctccacttggtctctcgaacccaacccagtctccctccgttcttctctctct
ttctccggtcaccttgcagaacttgaacggacaattgaactaagtgcttctacacccgct
tcaagttcgaatgtcgtggtggataatctgagagcgtatatgcagattattgatgtggct
tcgattttgggcttggattgtgatatatcagatcatgcgttccagttgtttagagattgt
tgttcagctacttgtttgaggaatcggagtgtcgaagctcttgctacagctgctcttgtt
caggctattagagaagcccaagaacccagaaccctccaggagatctcgattgctgccaat
gtacctcaaaaggagattgggaagtacatcaagatattgggagaagctttgcaactaagt
caaccaattaacagcaattcaatttcagtgcatatgcctagattctgcactctcctccaa
ctgaacaaatctgcccaggaactggcaactcacattggagaagttgttatcaacaaatgc
ttttgcacccggcggaatcccattagcatctctgcagctgctatatatctggcatgccaa
ctagaagataaaagaaagacacaggcagagatttgtaaggtgacaggtctcacagaagtc
accctccgtaaagtctacaaggagcttttggagaattggggtgatctgcttccaaaaaat
tatactcctgctgtccctcccgagaaggcatttcccacaactacaattacctcaggccga
tcttctgcacctaaaattgatccagttgaattagtatcttcatcttcggaaaaagataaa
caactagagagtaaatcaaataagccaagtgagttggccagaggcaaagaggacgctgaa
aataatggtaattcccgtgggatccaacctcctccatggcagaatttcaggcagccctgg
ctacagtttgtaacttctggagttcggatggtgggagatacaaatcagaacttagctcga
gtggatatcaatgagtcgcagcctcgtcgtcaagagtttgaagagaaggcagacaagcag
aaaatggataaagatccaacagcttcagcatggccaaaccagttatctagttccccagct
tcaggtgcgagcacaatctcctggccatttcggtcaccaactttatcagggccttctcca
atagtacagccaccacccaagctaacaccaggttatgctgagcttaaaggtattggcagt
caaaatggaggtaaaactggcaataatagtggagataacaagtaa
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