Populus trichocarpa (black cottonwood): 7473194
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Entry
7473194 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7473194 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
pop03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7473194
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
7473194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7473194
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
7473194
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
7473194
NCBI-ProteinID:
XP_024462486
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Position
8:complement(12569185..12574489)
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AA seq
641 aa
AA seq
DB search
MAGEKMDYEEEEKMQYQGSGAIPALAEEEMGEDDEYDDLYNDVNVGENFLQMHGSEAPAP
PATAGNGGFQTRNAHESRVETGGSQALAITGGGPAVEGIYSNAKAHFPEQKQVAVAVEAQ
DVGPVDGSSVAQKGRVIEMSHDVQVRNMGFQKSTPVPPGIGVDPSDMSRKNANEPEPLPI
TGSAGPRGAPQMQVNQMHMSADVNRPVVNENQVRPPVENGSTTLYVGELHWWTTDAELES
FASQFGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNGHVFNGRPCVVAFASP
QTLKQMGASYMNKTQGQPQTQSQGRGSMNDGAGRGGNANFQSGDGGRNYGRGAWGRGGQG
ILNRGPGGGPMRGRGAMGPKNMAGNVAGVGSGANGGGYGQGLAGPAFGGPAGGMMPPQGM
MGAGFDPLYMGRGGGYGGFAGPGFPGMLPSFPAVNSMGLAGVAPHVNPAFFARGMAPNGM
GMMVSSGMDGPNPGMWSDTSMGGWGEEHGRRTRESSYDGDEGASEYGYGEGNHEKGARSS
GASREKERGSERDWSGNSDRRHRDEREQDWDRPEREHRYKEEKDSYRGHRQRERDSGYED
DRDRGHSSSRARSRSRAAPEEDYRSRTRDVDYGKRRRLPSE
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgagaaaatggattacgaagaagaggagaagatgcaatatcagggaagtggt
gccattcctgcgcttgcagaggaagagatgggagaagatgatgagtatgacgatctatac
aatgatgtcaatgttggggagaatttcttgcagatgcatggttcggaagcgccagcccca
cctgctacagcggggaatggaggattccaaactcgaaatgctcatgaatcaagagttgaa
actgggggttcacaagcgcttgctatcactgggggtgggcctgcagttgaagggatatat
tctaatgctaaggctcattttccagagcagaagcaggtggcagttgctgttgaagcacag
gatgtagggcctgttgatggatcttctgttgctcagaaagggagggttatagagatgagt
catgatgttcaagtgcgaaacatgggatttcagaaatcaacaccagtgcccccaggtatc
ggggttgatccttctgatatgagtagaaaaaatgctaacgagcctgaacctttgccaatt
actggcagtgcaggtcctcgaggtgctccacaaatgcaagttaatcaaatgcatatgagt
gcagatgttaatcgccctgtggttaatgaaaatcaggtccggccacctgtagagaatggt
tctaccacgctttatgttggagaattacattggtggaccactgatgcagagcttgaaagt
tttgcatctcaatttggaagggtcaaagagattaaattctttgatgagagggctagtggt
aagtctaaaggctattgccaagttgacttctatgaagcagctgctgcagcagcatgcaaa
gagggaatgaatggtcatgttttcaatggacgaccttgtgttgtggcttttgcttctcca
caaacactaaagcagatgggggcttcttacatgaacaaaacccagggtcagcctcagact
cagtctcaaggaagggggtctatgaatgatggtgcgggaagaggtggtaatgcgaacttt
caaagtggagatggaggaaggaactatggaagaggtgcttggggaaggggtgggcaggga
attctcaatcgaggacctgggggtggaccaatgaggggaagaggtgccatgggtcccaaa
aacatggctgggaatgttgctggagttggaagcggtgccaatggtggagggtatggacaa
ggccttgcaggtcctgcatttggtgggcctgccggtggaatgatgcctccccaaggtatg
atgggtgctggatttgatccactatacatgggacgagggggtggttatgggggttttgct
ggtcctggttttcctggcatgcttccttcatttcctgctgttaattcaatgggacttgct
ggggtggctccacatgtcaacccagctttctttgcccgaggaatggcacctaatgggatg
ggaatgatggtttcctctggaatggatggaccgaatccaggaatgtggtctgacacaagc
atgggaggatggggagaagagcatggtcgaaggacaagggagtcaagttatgatggcgat
gagggtgcttctgaatatggatatggagaggggaaccatgagaagggagctcggtcaagc
ggtgcctctagagaaaaggaacggggttctgagcgtgactggtcaggtaattctgatagg
cgtcaccgtgatgagagggaacaagactgggacaggccagaaagggagcacaggtacaag
gaagagaaagatagttaccgtggccatcggcaaagggagcgtgactcgggttatgaggat
gatcgggatagagggcactcttcttcaagagctcggagcagatcccgtgcggctccagaa
gaagattacaggtctcgaacaagggatgtagactatggcaagaggagacgcctaccatca
gagtga
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