Populus trichocarpa (black cottonwood): 7473605
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Entry
7473605 CDS
T01077
Name
(RefSeq) RNA-binding protein Y14A
KO
K12876
RNA-binding protein 8A
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7473605
09122 Translation
03013 Nucleocytoplasmic transport
7473605
03015 mRNA surveillance pathway
7473605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7473605
03041 Spliceosome [BR:
pop03041
]
7473605
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
7473605
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
7473605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
7473605
NCBI-ProteinID:
XP_024458309
LinkDB
All DBs
Position
6:complement(3317487..3319838)
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AA seq
176 aa
AA seq
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MRGRVMVDEDNGDVVMTEQPRGRGRERRKGRGLRLGGRGESRQQTLLHDEEEEEEGGNDR
NVLQLFTPLRSVEGWSVLLSGVHEEAQEDDILTLFGAFGHINNLHLNLDRRTGFLKGYAL
IEYENFMEAQAAISGMNGTKLFFRIISVDWAFSTGPFEGRRSFDTHRSRSPRRHLA
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcagagtcatggtagacgaagacaacggcgacgtcgtgatgacggaacagcca
agaggaagaggaagagaaaggcgcaaaggcagaggtctcagactcggaggacgaggagaa
tcaaggcaacagacactactccatgacgaagaagaagaggaagagggtgggaatgaccga
aatgtccttcaactcttcactcctcttcgctctgtagagggttggagtgttttgttgagt
ggagtgcatgaagaagcacaagaagatgatattctcactctatttggtgcttttggccac
atcaacaacttgcatctcaatcttgatcgccgcaccggatttcttaaggggtatgctctg
atagaatatgagaactttatggaagctcaagctgctatatctggaatgaatgggactaaa
ctcttctttcggatcatctctgttgactgggctttcagcactggtcctttcgaagggaga
agatcatttgacacacaccgttcaaggagcccaaggagacacctagcttag
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