KEGG   Populus trichocarpa (black cottonwood): 7473605
Entry
7473605           CDS       T01077                                 
Name
(RefSeq) RNA-binding protein Y14A
  KO
K12876  RNA-binding protein 8A
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03013  Nucleocytoplasmic transport
pop03015  mRNA surveillance pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7473605
  09122 Translation
   03013 Nucleocytoplasmic transport
    7473605
   03015 mRNA surveillance pathway
    7473605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7473605
   03041 Spliceosome [BR:pop03041]
    7473605
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     7473605
Spliceosome [BR:pop03041]
 Complex C
  Other components
   EJC/TREX
    7473605
SSDB
Motif
Pfam: RRM_1 RRM_5
Other DBs
NCBI-GeneID: 7473605
NCBI-ProteinID: XP_024458309
LinkDB
Position
6:complement(3317487..3319838)
AA seq 176 aa
MRGRVMVDEDNGDVVMTEQPRGRGRERRKGRGLRLGGRGESRQQTLLHDEEEEEEGGNDR
NVLQLFTPLRSVEGWSVLLSGVHEEAQEDDILTLFGAFGHINNLHLNLDRRTGFLKGYAL
IEYENFMEAQAAISGMNGTKLFFRIISVDWAFSTGPFEGRRSFDTHRSRSPRRHLA
NT seq 531 nt   +upstreamnt  +downstreamnt
atgagaggcagagtcatggtagacgaagacaacggcgacgtcgtgatgacggaacagcca
agaggaagaggaagagaaaggcgcaaaggcagaggtctcagactcggaggacgaggagaa
tcaaggcaacagacactactccatgacgaagaagaagaggaagagggtgggaatgaccga
aatgtccttcaactcttcactcctcttcgctctgtagagggttggagtgttttgttgagt
ggagtgcatgaagaagcacaagaagatgatattctcactctatttggtgcttttggccac
atcaacaacttgcatctcaatcttgatcgccgcaccggatttcttaaggggtatgctctg
atagaatatgagaactttatggaagctcaagctgctatatctggaatgaatgggactaaa
ctcttctttcggatcatctctgttgactgggctttcagcactggtcctttcgaagggaga
agatcatttgacacacaccgttcaaggagcccaaggagacacctagcttag

DBGET integrated database retrieval system