Populus trichocarpa (black cottonwood): 7473907
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Entry
7473907 CDS
T01077
Name
(RefSeq) protein HASTY 1
KO
K14289
exportin-5
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7473907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
7473907
03036 Chromosome and associated proteins [BR:
pop03036
]
7473907
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
7473907
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
7473907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exportin-5
Xpo1
Motif
Other DBs
NCBI-GeneID:
7473907
NCBI-ProteinID:
XP_052302293
LinkDB
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Position
13:complement(2063979..2077231)
Genome browser
AA seq
1208 aa
AA seq
DB search
MEESNSNNHIANNVARAIAAALDWNSTPDARKAAVSFLESIKAGDVRILASSSFVLVKKD
WSSEIRLHAFKMLQHLVRLRWEELSPTERRNFANAAVELMAEIANSCEEWVLKSQTAALV
AEIVRREGLELWKELLPSLVSLSSQGPIQAELVSMTLRWLPEDITVHNEDLEGDRRRLLL
RGLTQSLPEMLPLLYTLLERHFGAALSEAGRQQLDIAKQHAATVTATLNAVNAYAEWAPL
QDLAKYGIIYGCGVMLSSPDFRLHACEFFKLVSQRKRPADASASEFDSAMRNIFQIMMNV
SRDILYKTVSSAGVMDESEFEFAEYICESMVSLGSFNFQCISGDNTILSLYLQQMLGFFQ
HFKLALHYQSLLFWLVLMRDLMSKPKVTAYSADGSAFNSAGSSSGQVDDEKRRTLSLVDD
DICVVILDISFQRLLKKEKVFSGNSFSPGTLELWSDDFEGKGDFGQYRSKLTELMRLVAS
FKPLIAGAKISERILSIIKSIPNSQIPVQDLAVMESMQVALENVVNAVFDGSNGYAAVSS
EVHLALCRVFEDLLQQLLSLKWTEPTLVEILGHYLDALGPFLKYFPDAVGGVINKLFELL
MSIPFVVKDPSVSSARHARLQICTSFIRIAKSADKSVLPHMKGIADTMAYMQREGSLLRG
EHNLLGEAFLVMASAAGTQQQQEVLAWLLEPLSQQWTQLEWQNNYLSEPLGLIRLCSETA
FMWSIFHTVTFFEKALKRSGIRKGSLNLQSISTASTIHPMASHLSWMLPPLLKLLRAVHS
LWSASISQMLPGDIKAAMTMGNAERYSLLGEGNPKLSKGSLNFIDGSHIDTSREGHTETN
EADIRNWLKGIRDSGYNVLGLSMTIGDPFFKCLDVHSVGVALLENIQSMEFRHTRQLVHS
ALIPLVKHCPMEMWEVWLEKLLHPLFIHVQQALTFSWSSLLHEGKAKVPDVLGILAEADL
KAEVMEEKLLRDLTREMCVLLSTIASPGLNTGLPTLEQSGHAIRVDASSLKELDAFASNS
MVGFLLKHNGLAVPALQICLEAFTWTDGEAVSKVLSFCASVILLAISANNVQLREFVSKD
LFSAIIKGLALESNAFISADLVGFCREIFMHLCDRDPAPRQVLLSLPCIKPQDLVAFEEA
LTKTASPKEQKQHMKSLLLLATGNMLKALAAQKSVNIITNVTMRPRSSVNAPETRIDEGD
TIGLAAIL
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggaagagagtaatagcaataaccacatagcaaacaatgtggctcgagcaattgctgct
gctcttgactggaactctactcctgatgctcgcaaagctgctgtgtctttccttgaatcc
atcaaagcaggagatgtacgaattttggccagctcatcattcgttcttgtcaaaaaggac
tggtcttctgaaattcggttgcatgctttcaaaatgctgcagcatttggtacggttgcga
tgggaggaattgagcccaacagaacgcaggaactttgcgaatgctgctgttgagttgatg
gctgaaattgcaaattcctgtgaagaatgggtgctgaaaagtcagacagctgcccttgtt
gctgagattgtcagaagagaaggcttagaactgtggaaagaactgcttccatctctggtt
tccctatctagtcagggccccatacaagctgagttggtttcgatgacactgaggtggctt
cctgaagatattacagttcacaatgaagatttagaaggtgatcggcgtaggttattgttg
cgagggcttactcagtcattgcctgaaatgctgccactactatacaccttacttgagaga
cattttggagctgcattgagcgaagcagggaggcagcaactggacatcgcaaaacagcat
gcagcaacagtaacagcgactttgaatgctgtcaacgcttatgctgagtgggcgcctttg
caggatctagccaaatatggcataatttatggctgtggtgtcatgctgtcttctcctgac
tttcgtcttcatgcctgtgaatttttcaaactcgtctcacaaaggaagagacctgccgat
gcctctgcttctgaatttgattctgcaatgcgtaatatctttcagatcatgatgaatgtc
tcaagagatattttgtacaaaactgtctcaagtgctggagttatggatgagagtgaattt
gagtttgcagaatatatatgcgagagtatggtgtctttgggttcttttaactttcaatgc
atttctggtgacaacactatactctctctttatttacagcagatgctgggcttttttcaa
cattttaagctagctcttcattatcaatccctgctattttggctggtgctaatgagagat
ttaatgtcaaagccgaaagttactgcatattcagcagacgggtctgcttttaacagtgca
ggctctagttctggacaggttgatgatgaaaaaaggaggactttaagccttgtggatgat
gatatttgtgttgtaattctggatatctctttccagcgcttgcttaagaaagaaaaggtt
ttctctgggaattccttttctcctggaacattggagttgtggagtgatgattttgaaggc
aagggtgactttggccaatatcgttccaagctgaccgagctgatgagacttgttgcttct
tttaagcccctaatagctggtgctaaaatctctgaaagaattctttcaatcattaagagc
attccaaattctcaaatacctgttcaggacttagctgtgatggaaagcatgcaagtggct
ttagaaaatgttgtcaatgcagtttttgatggatcaaatggctatgcggcggtcagttcg
gaagttcacctagcgttgtgtagagtttttgaagatttacttcagcaactcctttctttg
aaatggacggagccaactcttgtggaaatcctagggcactatttagacgcgctgggtcca
tttttgaagtattttccagatgcggttggtggtgtcattaataaattattcgagcttcta
atgtcaatcccatttgttgttaaggatccttcagtaagcagtgcacgccatgcaaggtta
cagatttgtacgtcatttattcgaatagccaaatctgctgacaaaagtgttctacctcat
atgaaaggaatagctgataccatggcatatatgcaaagagagggctctctgcttcgtggt
gaacataatctgctaggtgaagcatttcttgttatggcttcagctgccgggactcaacaa
cagcaagaagttttggcctggttgcttgaacctttgagccaacagtggacacagctagag
tggcaaaataattatttgtctgagccactaggtctgatccgtttgtgctctgagacagca
ttcatgtggtcaattttccacactgtgacattctttgagaaggcacttaagaggagtgga
atcagaaaaggcagtctgaatttgcaaagcatctcaacagcaagtactatacatccaatg
gcttctcatctgtcctggatgctgccacccctcttgaaacttcttcgtgctgtgcactca
ctttggtctgcatccatatctcaaatgttacctggagatatcaaagctgccatgaccatg
ggcaatgctgaacgatatagtctccttggggaaggaaaccccaaattgtccaaaggttcc
ttaaacttcatagatggatctcatattgatacaagtagggaaggacacaccgaaacaaat
gaagctgatatacggaattggttgaaaggtatcagagatagtggatacaatgtattgggc
ctatcgatgaccattggtgatccattttttaaatgtttggatgttcattctgttggtgtg
gcactactggaaaacatacagtcaatggagttcagacatacaaggcagcttgtccattca
gctttgatacctttggttaaacattgtcctatggaaatgtgggaggtctggctggaaaag
ctcttgcatccattatttatccatgtacagcaagctcttaccttttcttggtccagtctc
ctgcatgagggtaaagcaaaggtcccagatgtccttggcatccttgctgaggcagacttg
aaagcagaagtaatggaagagaaactgcttcgagacctaactcgtgagatgtgcgttctt
ctctctacaatagcttcgcccggactaaataccgggcttcctactttagaacaatctggc
catgctatccgtgtggatgcatcttctttgaaggaattggacgcatttgcatcaaattct
atggttggttttcttttgaagcacaatggtttggctgttccagcattacagatttgttta
gaagctttcacatggacagatggtgaagcagtatcaaaagttttgtccttttgtgctagt
gtgattcttctagcaatctcagctaataatgttcaactcagagagtttgtttctaaagat
ctgttctctgcaattatcaaaggtttggcgctcgagtcaaatgcatttatcagtgctgat
ctagttggtttctgtcgagaaatattcatgcatctctgtgatagagatccagctccaagg
caggttctgctttctctcccttgtattaaaccccaggatttggttgcctttgaagaagct
ttgaccaagacagctagccctaaggaacaaaagcaacatatgaagagcttgcttttatta
gctactggaaacatgctaaaagcgctagctgctcagaagagtgtaaacattatcacaaat
gttacaatgaggcctcgcagctcggtaaatgctccagaaaccagaattgatgagggggat
actataggattggcagccattttgtga
DBGET
integrated database retrieval system
