Populus trichocarpa (black cottonwood): 7474071
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Entry
7474071 CDS
T01077
Name
(RefSeq) nibrin homolog isoform X1
KO
K10867
nibrin
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
7474071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
7474071
03400 DNA repair and recombination proteins [BR:
pop03400
]
7474071
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
7474071
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
7474071
BRCA1-C complex
7474071
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FHA
BRCT
PTCB-BRCT
Yop-YscD_cpl
ThiS
Motif
Other DBs
NCBI-GeneID:
7474071
NCBI-ProteinID:
XP_002322496
UniProt:
A0A2K1XN87
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Position
15:complement(15205043..15214518)
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AA seq
517 aa
AA seq
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MVWGLFPVDPLSGEDKYYIFTKGVYKVGRKGCDVIICKDKGVSRIHAELVVDEMISMDHP
LHMKSDLPSRVLIRDCSKYGTYINKEKVHKFLNKETSLKDGDVVSFGTGTAVYRFCFVPL
VFFVYCSESFQVDQLLRDKVSSIGACITYNLSEECTHVLADELMPVKEHLVDAIVSKKPI
VLRSWVELVAEKRIGLEIPSWSSYIPTLTVEGVSVKVAASGTRAKCLEGFTCLLESINMY
KFKDRLQSLLEVCGAKIVLVEEFCSNAKGLDCGQDSHVVCVIPRGSPDKFNLFNKLGSLS
RVNELDLLRAVLAGHLDLSVLVSPSVLVSSSCSTDETVVADSEAEVETPTSEHFTADISN
EEAPKYVNKLEMSIDPHLRSENNHVVSSTYSIGKMTAKRETVDEAESGNSDIIYSQDLII
RDLNLPAQISSTPNNEVLNFKRFRKGNTQSGNSFNNLIPFSKYPYKDFDYGNQDMLESVK
EEKRRKQMEAIAEDLFNTEKGRRRGVAGSLHVLLTRG
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggtgtggggtctttttccggtcgatcctctttcaggtgaagacaaatattatatcttt
acaaaaggtgtctacaaagttggccgaaaaggttgtgatgtaattatttgcaaagacaaa
ggtgtttctcgaatccatgcagaattagttgttgatgaaatgatttcaatggatcatcct
ctgcacatgaaatctgacctaccctcccgagttctgattagagattgctccaagtatgga
acatacattaacaaggaaaaggtacataagttcctaaataaagaaacatctttaaaagat
ggagatgtggtttcctttggaactggtactgccgtctacaggttctgttttgttccactc
gtatttttcgtctactgttccgagtcctttcaagtggatcagcttcttcgagacaaagtc
tcatcaattggtgcttgcattacctacaatttgagtgaagagtgcacacatgttcttgct
gatgaactcatgccagttaaagaacatcttgttgatgctattgtgtctaagaaacctatt
gttctcaggagttgggttgagttggttgcagaaaaaaggattggattagaaattcctagc
tggagctcctatattcctacattgacagtggaaggagtatcagtcaaagttgcagcatca
ggaactcgtgctaagtgtttggaaggattcacctgtctactggaatcaataaatatgtac
aagttcaaggacaggttgcagtctctgttggaagtatgcggcgcaaagattgttttagta
gaagaattctgttcaaatgccaaaggtttggattgtgggcaagacagtcatgtggtatgc
gtcatccccagaggatcaccagacaagtttaatttgttcaacaagctgggttcattgtct
agagtgaatgagttggatctgttaagagctgttttagccggacatctagacttgtctgtt
ttggtatcaccatctgttcttgtttcatcatcatgctctactgatgagacagtagtagca
gattctgaggcagaagtggaaacaccaacatcagagcatttcactgcagatatctccaat
gaagaagcgccaaaatatgtgaacaaactggaaatgtcaattgaccctcatcttagatca
gaaaataaccatgttgtaagctctacttacagtattggtaagatgacagcaaaacgagaa
acagttgatgaggctgaaagtggaaattctgatattatttatagccaagatttaatcatt
agagatttgaatttacctgctcaaatcagttcgactccaaataatgaagttttgaatttc
aaacgcttcagaaagggtaacactcaatcagggaatagtttcaacaatctgattccattc
tcgaaatatccatacaaagattttgactatgggaatcaggatatgctcgagtctgtgaag
gaagagaaaaggcgaaagcaaatggaagcaattgcagaggacttattcaacactgaaaag
ggaaggcggcgtggagttgctggttctcttcacgtacttcttacacgtggctga
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