Populus trichocarpa (black cottonwood): 7474429
Help
Entry
7474429 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7474429 isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7474429
Membrane trafficking [BR:
pop04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
7474429
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
7474429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
ANAPC4_WD40
WD40_Prp19
WDR55
PEP5_VPS11_N
Synaptobrevin
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
Utp8_b_propeller
WD40_like
CPSF_A
Motif
Other DBs
NCBI-GeneID:
7474429
NCBI-ProteinID:
XP_024466422
LinkDB
All DBs
Position
10:18402731..18414019
Genome browser
AA seq
1149 aa
AA seq
DB search
MFSKLFQRNTSQQQPPPPQQQPPAQPQPQPQPQPQPQPPPPPPPAEVQDNVSKGVLTPKD
INPRIALHYGIPSTASILAFDHVQSLLAIGTLDGRIKVIGGNNIEGLLVSPKQSPFKYLE
FLQNQGFLVSVSNENEIQVWDLEQRRIASSLQWESNITAFSVIFCSSYMYVGDEYGMVYV
LKYDAEEVKLVPMPYHVPADVAADASGMSSPKNRSVVGVLPQPSSQGNKVLIAYEDGLII
IWDVSEDKVVLVKGNKDLELKCKITADSHKDTGPELSDDISDYQPLEKEIAALCWASTDG
SVLAVGYVDGDILLWNLSSTTSAKDMHAAKSSNDVVKLLLSTGDRRLPVIVLHWSAHRSH
NDCRGRLFVYGGDAIGSEEALTILSLDWSSGIESLKCTGRVDLTLNGSFADMVLLPSVGD
MGTSSTLILTNPGQLNLYNDAGLSSSISLLEKRNYVSSIQYPMVIPTIEPQLTLAKLGLV
FRDGKFSKALSKEISSRKLQATHCPRSTNWPLTGGVPSQLQDAEKYQVERLYMAGYQDGT
VKIWDATYPTFALIYVLGPEVKGINVADADANASVSALEFCSDTLSLAIGNERGMVCLYK
LVRSADEMTLKFVTGTEKEGIALFYTLDQGDGPQCTAVFSFLSSPIYALQFANFGTRLAV
GFHCSQVALLDTSTSSVLFLTDSLSGSNSPITSLAVRVFSDSSDLINNREDTESKTMEDH
VRLEVFVMTKDAHTVVIDGNTGGILCSQSIKSEKELTSPSLYIMEGDDLISEMSSGKHVS
NSSQKSEAKSEPVPDVACSESAPLKVDHEASAKASHFKQRVENFLLLFCCEDALDLYSLN
EVDINPIRKVNLMKPCCWSTQFKKDDKDCGVILLYQTGEIEIRSLPDLEVVGESSLMSIL
RWNFKTNMEKTICSSENAQIILVNGCEFAAISLLACENDFRIPESLPSLHDKLLTAAADA
TISLSPNQKITQGASSGILGGLVKGFQGSMAEHDVDLFEVCKNNFAHLEGIFSSPPFLKP
SIDLVDDQKVVELRIDDIDIDEPLFVSSSSEMMSKNDTKDRGTERERLFEGASTDSQPKL
KTADEIKAKYRKEDVSAVAARAKDKLIQRQEKLERLSERTAELQSGAENFGSMANELAKQ
MEKRKWWNI
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgttttccaaactctttcaaagaaacacctcacaacaacaaccaccaccacctcagcaa
caaccaccagcgcaaccgcaaccacaaccacaaccacaaccacaaccacaaccaccacca
ccaccaccacccgcggaggtgcaggataatgtgtcaaagggagtattgacacctaaagat
ataaatccacggattgctcttcactatgggatcccttctactgcttctattttagctttt
gatcacgttcaaagccttttagcaattggaacactggatggcagaataaaagtgattggt
ggtaataacattgaagggcttcttgtctctccaaagcaatcaccctttaaatacttggag
tttctacaaaatcaaggtttcctggtcagcgtgtcaaatgaaaatgagattcaggtttgg
gatttagagcaaagacggattgcttcctctttacaatgggagtccaacataactgcattc
tctgttattttttgctcaagttacatgtatgttggagatgagtacgggatggtgtatgtg
ttaaagtatgatgctgaagaagttaaacttgtaccaatgccataccatgttcctgcagat
gtagcagctgatgcatctgggatgtcatcacctaaaaatcgctctgttgtaggagttcta
ccccaaccttcttctcaaggaaacaaagtgttgattgcatatgaggatggattgattatt
atttgggatgtctctgaagataaagttgttctagttaaagggaataaagatcttgaattg
aaatgtaaaataacagctgattctcacaaagacaccggacctgagctttctgatgatata
tcagactatcagccattggagaaagagatagctgccctctgttgggcatctactgatggg
tcagttcttgccgtgggttatgttgatggagatatattgttgtggaacctatcaagtact
acttctgctaaagatatgcatgctgcaaaatcgtcaaatgatgttgttaagctgctgtta
tccacaggcgacagaagactccctgtcattgttttgcattggtctgcacacagatcgcat
aatgactgtcgtggccgtctatttgtctatggtggtgatgcaattggatctgaagaagct
ctaacgattttgagccttgattggtcttctgggatagaaagtttaaaatgcactgggcgt
gttgatcttactcttaatggttcttttgctgatatggttcttttaccaagtgttggtgat
atgggaacttctagcactttgatattaacgaatccaggacagctgaatctttataacgat
gctggcttgtcttcctcaatatccctgctggagaaaaggaattatgtttcttctatacag
taccctatggtcatacctactattgaaccacaattaactctggcaaaacttggtctggtc
tttagagatgggaagttctcaaaggctctttctaaggaaatttcttctagaaaacttcaa
gcaacacattgtcccagaagtacaaattggccattgactggtggagttcccagccaactt
caagatgcagaaaagtatcaggttgagagattatatatggcaggttaccaagatggaact
gtaaaaatatgggatgccacatatccaacatttgcgctcatatatgttttaggacctgag
gtcaaaggtatcaatgtcgctgatgctgatgctaatgcatcagtatctgctttggagttt
tgctcagataccttaagtttagctattggcaatgagcgtggtatggtttgtctatataag
cttgtacggagtgctgatgagatgactttgaagttcgtgacaggaactgaaaaagagggt
atcgccctattctacactctggaccaaggggatggacctcaatgtacagctgtattttcc
ttcctaagttctcctatatatgctctgcaatttgcaaattttggaaccagacttgctgtg
ggatttcattgttcccaggtagcactgctcgacactagtacatcatcagtgttgtttctt
actgacagtctatctggctccaattcacctatcacttctctggctgtgagagtgttttca
gattctagtgacttaataaataatcgagaggacactgaatccaaaactatggaagatcat
gtacggttggaagtgtttgttatgaccaaagatgcccatactgttgtcatagatggcaac
actggtggtattctctgctcccaatcaataaaatctgaaaaggaactgacttcaccatca
ctgtatatcatggaaggtgatgacttgatctccgaaatgtctagtggaaaacatgtatct
aattcatctcagaaaagcgaagctaaaagtgaacctgtcccagatgttgcttgcagtgaa
agtgctccacttaaagttgaccatgaggcctctgccaaagcttcccattttaagcagaga
gtcgaaaattttcttcttttgttttgttgtgaggatgcattggatttgtactctttgaat
gaggtggacattaatcctattcgaaaggtaaatctcatgaaaccatgctgttggagtaca
cagttcaagaaggatgataaagactgtggggtcattttactctatcagactggagagatt
gaaataagatctttaccagatcttgaagtggttggagaaagctctttaatgtcaatccta
aggtggaacttcaagactaatatggagaagacaatatgttcatctgaaaatgcgcagatt
attctggtaaatgggtgtgaatttgctgctatatctcttttggcctgtgaaaatgacttc
aggatcccagagtcgttgcctagccttcatgataaactacttacagctgctgctgatgcc
actatcagtttatctcccaatcagaagataacacagggtgcttcctctggaattttaggt
ggtttggttaaggggttccaagggagcatggcagagcacgatgtagatctttttgaagtt
tgtaagaataattttgcacatttagagggcatattttccagccctcctttcttaaagcct
tccatcgaccttgtggatgaccaaaaagttgtggagcttcgtatagatgacattgatatt
gatgaacctctatttgtctcatcttcatctgaaatgatgagcaagaatgatactaaagat
aggggaacagaaagggaaagattatttgaaggtgcaagtactgattcacagccaaagctc
aaaacagctgatgaaattaaggctaaatataggaaggaggatgtctctgctgtagctgca
cgtgcaaaggataagctcatacaacgccaggagaagcttgagaggctcagtgagcgtaca
gccgagttgcagagtggggctgaaaactttggatcaatggctaatgaacttgccaagcaa
atggagaaacgcaaatggtggaacatttga
DBGET
integrated database retrieval system
