Populus trichocarpa (black cottonwood): 7474823
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Entry
7474823 CDS
T01077
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase component HRD3A
KO
K14026
SEL1 protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7474823
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Motif
Pfam:
Sel1
TPR_2
Motif
Other DBs
NCBI-GeneID:
7474823
NCBI-ProteinID:
XP_002322109
UniProt:
B9IEC9
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Position
15:3276496..3282258
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AA seq
683 aa
AA seq
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MQKYNLTLSLLIFSLLPPSLLAGPFVLILSQDDLKDIPSSATTTDADPAESLPEWDEFGD
SDSKPEHELEPGSWRPIFEPDAVNSSTSESKLDTEMEQYYSAVEKMLSAVSDGEVGVIEE
SVAEIEELASVKGNSHAQSVLGFLYGLGQIKERNKAKAFLYHNFAAKGGNLQSKLAIAYT
YYRQHMYEKAVKLYAELAEVAVNSFLISKYSPVIEPVRIHNGAEENKEALRKSRGEDDDV
FQILEYQAQKGNAGAMYKIGYFYYFGLRGLRRDHAKALAWFSKAVEKGEPRSMELLGEIY
ARGAGVERNYTKALEWLTLAAKQQLYSAYNGMGYLYVKGYGVEKKNYTKAKEYFERAADN
EDAGGHYNLGVIHLKGIGVKRDVKLACQYFIVAANAGQPKAFYQLAKMFHKGVGLKKNLP
MATGLYKLVAERGPWNSLSRWALESYLKGNVGKASLLYSRMAELGYEIAQSNAAWILDKY
AEHSMCVGESGFCTDSERHQRAHSLWWEASEQGNEHAALLIGDAYYYGRGTVRDYERAAE
AYMHAKSQSNAQAMFNLGYMHEHGKGLPFDLHLAKRYYDQALEIDSAAKLPVTLALTSLW
IRKNYADSVMVHVIDSLPEFYPKIEAWVENVILEEGNATILTLFVCLLTVLYFRERQRRN
AGVAAGEVGIPDQPIEHAPPAPN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaatacaatctcactctctctctcctaattttctctctcctccccccatctctc
ctcgccggcccattcgttctcatcctctcacaagacgaccttaaagacatcccttcctcc
gccaccaccaccgatgctgaccccgctgagtcactgcccgagtgggacgagttcggcgac
tccgactccaaacccgaacacgaactcgaacctggctcctggcgcccgatctttgaaccc
gacgccgtcaattcctccacctccgaatcgaaactcgatacggagatggagcagtattac
tccgccgtggagaagatgttgtcggcggtgagtgacggcgaggttggagttattgaggaa
tcagtggcggaaattgaggaattggcgagtgtgaaggggaattcgcatgcccaatcggtt
ttagggtttttgtatgggttagggcaaattaaagagaggaataaagctaaggcttttttg
tatcataatttcgcggccaagggaggcaatttgcagtctaaactggctattgcctacact
tattaccggcagcacatgtatgaaaaggcagttaaattatatgcggaattagcagaagta
gcagtaaatagttttttgatttcaaagtattctcccgtgattgaaccagttaggatacat
aatggggctgaggagaataaggaggccttgaggaaatcacgaggggaggatgatgacgtg
ttccagattttggaatatcaagctcaaaaagggaatgcaggtgctatgtataaaattggg
tatttttactactttggattaagaggattgaggcgtgatcatgctaaagcattggcatgg
ttctcaaaggctgtggagaaaggggaacctagatcaatggaacttcttggtgaaatatat
gcgcggggagctggagttgagaggaattatactaaagcgcttgaatggcttacacttgca
gcaaaacagcagctttattcggcttataatggcatggggtatttgtatgtcaagggctat
ggagtggaaaagaagaactacactaaagcaaaagaatactttgagagggctgctgacaat
gaagatgctggtgggcactataaccttggagtaatacatcttaaagggattggggtaaag
agagatgtaaagctagcatgccaatattttatagtagctgctaatgcaggtcaaccaaag
gcattttaccagctggcaaagatgtttcataagggtgtggggcttaaaaagaatcttcct
atggctactggattatacaaactagtagcagaacgaggcccatggaactccttgtctaga
tgggcattggaatcatacctaaaaggcaatgtaggcaaagcatccttgttgtattcaagg
atggctgagctgggctatgagattgcacaaagtaatgctgcatggattcttgacaaatat
gcagagcatagcatgtgcgtgggagaatctggattttgtacagattcagaaagacaccag
cgggctcattctttgtggtgggaagcttcagagcagggtaatgaacatgctgctttgctg
attggtgatgcatattactatggtcggggcactgtgagggattatgaacgagcagcagag
gcttacatgcatgccaaatctcaatctaatgcacaagctatgttcaatcttggttacatg
catgagcatggtaaaggacttccatttgaccttcatcttgccaagcgatactatgaccaa
gctctagagatcgattctgcagcaaagttacctgtcacactggccctcacaagcttgtgg
ataagaaagaactacgcagacagtgtcatggtacacgtgattgattcattgcctgaattc
tatccaaaaatcgaagcatgggtggagaatgttatcctggaagaagggaatgcaacaata
cttactctatttgtctgtcttcttacggttctctattttcgtgaaaggcaacgcaggaat
gctggtgttgctgctggtgaggttggcataccagaccaacctatcgagcatgctcctcct
gcacctaattag
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