Populus trichocarpa (black cottonwood): 7474827
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Entry
7474827 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7474827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7474827
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
7474827
Complex C
U5 SnRNP specific factors
7474827
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF2608
Motif
Other DBs
NCBI-GeneID:
7474827
NCBI-ProteinID:
XP_024442529
LinkDB
All DBs
Position
15:3194641..3197421
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AA seq
708 aa
AA seq
DB search
MKRSFDDIGVSKTQSKPVFLTKAQREQLALQRRQEEIEQQKKRQQLLLSQTRPSNSESDK
PPSNSDRRDQRDRDREREMERDRERERERERERERERERERSSRRNREREREEEAKAREQ
ARLDKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQ
NPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDFRDELRKKEGVEKNPEEAAAQKLKEEAA
DRYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWAESKLTSELL
KAVERVVYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTCAFVLPMLTYISRLPPMSEDN
EAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIA
TPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEEL
DEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMTKESEKSS
RLHRLLDELGDKTAIVFVNTKKNADMVAKNLDKHGYRVTTLHGGKSQEQREISLEGFRTK
RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVASTFLTLGDT
DVFYDLKQMLIQSNSSVPPELARHEASKFKPGTIPDRPPRRNDTVFAH
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgctcattcgacgacattggcgtctccaaaacccaaagcaaacctgtcttcttg
accaaagctcaacgcgagcaattagcccttcaacgccgccaagaagaaatcgaacaacaa
aagaaacgccaacaactcctcctctcccaaacccgcccttccaactcggagtccgacaaa
cccccatccaattctgaccgccgtgaccagcgtgacagagacagagagcgcgagatggag
agagatagggaaagggaaagggaaagggaaagggaaagggagcgggaacgggaacgcgaa
cgctcctcgcggcgcaacagagaacgcgaacgtgaagaggaagcaaaggcgcgtgagcaa
gccaggctggataaattagcggagagagagcgagagaaggagctggatgcgattaaagag
caatatctagggtcgaaaaagcctaagaagagagtaataaaacctagtgagaagtttcgc
ttctcttttgattgggaaaacacggaagacacttctagagacatgaatattttgtatcaa
aaccctcatgaggcacaacttttgttcggtcgagggtttagggctggaatggaccggaga
gagcagaaaaaacttgctgcaaagaatgagaaggattttagagacgaacttcgaaagaaa
gaaggtgtagagaagaatccagaagaggcggctgcccaaaaattgaaggaagaagctgct
gataggtatgacacttttgatatgcgtgttgataggcattggtccgagaagaagcttgaa
gaaatgactgagagagattggaggatatttagggaagattttaatatttcttataagggt
tccaagattccgcggcccatgaggagttgggcagagagtaagttgactagcgagttgttg
aaggcagtggagagggtagtgtataagaagccgtcgcctattcaaatggcagcgattcca
ctgggattgcaacaacgggatgttatcgggattgctgagactggttcaggtaagacttgt
gcttttgttttgcctatgttgacttatatttctaggttgcctccaatgagtgaggataat
gaggccgaagggccttatgcagttgttatggcacctactcgtgagttggcgcaacaaatt
gaggacgaaactgtcaagtttgcacattatttgggtattaaagtagtttctattgttggt
gggcagtctattgaagagcaagggtttaggattaggcaaggttgtgaggtggttattgct
actccaggtcgtttgcttgattgtttggagaggcgttatgctgtgttgaatcagtgtaat
tatgttgtgcttgatgaggctgataggatgattgatatgggttttgaaccccaggttatg
ggagtgttggatgcaatgccatcgagcaatttgaagccagaaaatgaagatgaagagctt
gatgagaaaaagatttatcgcaccacttatatgtttagtgctactatgccacctgcagtg
gagcggcttgcaaggaagtacttgagaaaccctgttgtggtcactattggcactgctggg
aaggccactgacttgatatcccaacatgtgataatgacgaaggaatcggagaagtccagc
aggttgcatagattgcttgatgaacttggagataagactgcaattgtttttgttaacact
aaaaagaatgcagatatggtggccaagaatttggacaagcatggctatcgtgtgacgact
ttgcatggtgggaagtcccaggagcagagggaaattagccttgaaggttttaggaccaaa
agatacaatgttcttgtggcaacagatgttgcaggtcgtggtattgatatacctgatgtg
gcccatgtcattaattatgatatgcctggaaatattgaaatgtatactcaccgtattgga
cgaacaggccgtgctggaaagacaggtgtggcttcaacattcttaactcttggggacaca
gatgttttttatgatctcaagcaaatgcttatccagagtaacagttctgtgcctcctgag
ttggctaggcacgaggcttcaaaattcaagccaggaacaattcctgatagacctcctaga
cgaaatgacactgtttttgctcactga
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