Populus trichocarpa (black cottonwood): 7474983
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Entry
7474983 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7474983 isoform X1
KO
K11804
DDB1- and CUL4-associated factor 8
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7474983
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
7474983
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_EML
EIF3I
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
NBCH_WD40
Beta-prop_VPS8
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
7474983
NCBI-ProteinID:
XP_002312940
UniProt:
B9HR20
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All DBs
Position
9:complement(11150352..11153950)
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AA seq
496 aa
AA seq
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MMKKRSRTDLDQAVVNVCKRELGQLSTRDFAHRLAASEDLVLRLEIHKKLEKHEGCVNTL
SFNSGGDVLISGSDDLRVILWDWETGRVKLSFNSGHRNNVFQAKFMPFSDDRTIVTCAAD
GEIRQAQILEGGEVKTILLGKHKDSRVHKLAIEPGSPHIFYSCGEDGVVQHFDLRTRSAT
ELFTCRSINDPRSFQPYVHLNAIAIDPRNPNLFAVGGMDEFARLYDIRKYSWDGSSDFGQ
PADYFCPQHLIGNGDTGITGLSFSDQSELLVSYNNEFIYLFTRDMGLGNPPFPSFSSPIS
MGSDTSEVEPGSIASSSSMDVDGKNAAQAYKGHRNCETVKGVSFFGPRCEYVSSGSDCGR
IFIWKKRGGELIRVMEADRDVVNCTEPHPHTMALASSGIESDIKIWTPKAIERATLPTNI
GQVKPKARGWMYRLASPEDLMLQLFSLQRQRTSPESVVQNSVMDSELLELILSFNANSDV
SSDDGGDAANHDDSLG
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaaaaagaagcagaacggacctcgatcaagcagtagttaatgtttgtaaacgc
gaactcggtcagctctccactcgcgatttcgctcaccgtctcgccgcctccgaggatctt
gtattgaggcttgaaatacacaagaagttggagaagcacgaagggtgcgtgaacacgctg
agttttaattctggtggtgatgttttgatatcgggctcagatgacctgcgggtgatttta
tgggattgggaaactgggcgtgttaaactttcctttaattcgggtcatcgtaataatgtg
tttcaagctaagttcatgcctttttctgatgatcggactattgttacttgtgctgctgat
ggcgagattcgacaagctcaaattctcgaagggggagaagtgaaaactatattgcttgga
aaacacaaagattcacgagttcataagttggctattgaacctgggagtcctcatatattt
tattcttgtggcgaggatggagtggttcaacattttgatttgagaactaggtctgccaca
gaactttttacttgccgatccattaatgatccaaggagtttccagccatatgtccatcta
aatgccattgctattgatccaagaaacccgaatctctttgcagttgggggaatggacgag
tttgctagactttatgacatccgcaagtatagttgggatgggtcaagtgattttggtcaa
cctgcagattacttctgtcctcagcatttgattggtaatggggatactggaattacaggc
ttgtcattctcagaccagagtgagcttctagtctcatataataacgagttcatctatctt
tttacaagagacatgggtttgggaaatcctccatttccatccttttcatccccaatttca
atgggcagtgatacaagtgaagtagaacctgggtctatagcatcttcatcatctatggat
gtggatgggaaaaatgctgcccaagcttataaggggcatagaaattgtgagactgtgaag
ggtgtgagcttttttgggccaagatgtgagtatgtttctagcggctctgattgtggtcgg
atatttatttggaagaaaaggggtggagagcttattcgtgttatggaagcagatagggat
gtggtaaattgtactgagcctcatcctcataccatggcgcttgctagcagcggaatcgag
tctgatataaaaatatggactccaaaggctattgagagagctactctgccaacaaatatt
ggacaggtgaaaccaaaggctaggggatggatgtaccgcttagcttcaccggaggacttg
atgttgcaattattttcacttcaaaggcagaggactagcccagaaagcgtggtgcagaac
tcggttatggatagcgaacttctagagcttatactatcattcaatgctaacagtgacgtt
tcttcagatgatggaggagatgctgcaaatcacgatgactcgttgggttag
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