Populus trichocarpa (black cottonwood): 7475076
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Entry
7475076 CDS
T01077
Name
(RefSeq) oligouridylate-binding protein 1B isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7475076
03041 Spliceosome [BR:
pop03041
]
7475076
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
7475076
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
7475076
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
7475076
NCBI-ProteinID:
XP_002298224
UniProt:
B9GG42
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All DBs
Position
1:complement(14133405..14138921)
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AA seq
427 aa
AA seq
DB search
MQQQRLKQQQQALMQQALLQQQSLLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRS
VYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRAAALAILSLNGRH
LFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQK
TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAAKGASSNDDKQSSDSKSVVE
LTNGTSEDCKEATNNEAPENNPQYTTVYVGNLAPEVAQPDLHRHFHALGAGVIEEVRVQR
DKGFGFVRFSTHAEAALAIQMGNTQSLFGKQMKCSWGSKPTPPGTSSNPLPPPAAAPLPG
LTATDILAYERQLAISKMGGIHALMHPQGQHPLKQATMGMGAAGASQAIYDGGFQNVAAA
QQLMYYQ
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaacagaggcttaaacagcaacaacaagcactgatgcaacaggctcttcttcaa
caacagtctcttcttcaacaacagtctctttaccatcctggcctcctcgctcctcctcag
attgagccaattccaagtggaaatctgcctcctggttttgatccaagtacttgccgcagt
gtgtatgtgggaaacatccacactcaggtaactgaaccccttctccaagaggtttttgcg
agtactggtcctgttgaaggatgcaagcttatcagaaaagaaaagtcgtcctatggattt
attcactactttgatcgtcgagcagctgctcttgcaatattatctcttaatggaaggcat
ctatttgggcagcctattaaagttaactgggcatatgctagtggtcagagagaagataca
tcaggtcacttcaacatttttgttggagatcttagtcctgaggttactgatgcaacattg
tatgcctgcttttctgtttatcccagttgttcagatgcaagggttatgtgggatcagaag
actgggcgttcaagagggtttggatttgtttcctttcgaaatcaacaggatgcccagagt
gcaataaatgacctaacaggaaagtggcttggtagtagacagattcggtgcaactgggca
gctaaaggtgccagttccaatgacgacaagcaaagctctgattcaaaaagtgtggtggaa
ctaacaaatggcacgtcagaggattgcaaggaggcaacaaataatgaggctcctgaaaac
aatcctcaatatactactgtttatgttggcaatcttgctccagaggtagcacagcctgat
ctccatcgccacttccatgctcttggtgctggagttattgaggaggttcgtgtccagaga
gacaaaggttttggttttgtgaggttcagtactcatgcagaggcagctttagctattcag
atgggaaacacccaatcactttttggaaaacagatgaagtgctcatggggtagcaagcct
actccgccggggacaagctcaaacccactccccccacctgctgctgcccctttgcctggt
ctcacagctactgatatcttggcatatgagaggcagctagcgataagcaagatgggtggt
atccatgccttgatgcatcctcaggggcagcatcctctaaaacaagcaacaatgggaatg
ggtgctgccggagcaagccaggcaatatatgatggtggtttccagaatgttgctgctgcc
cagcaactgatgtactatcagtaa
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