Populus trichocarpa (black cottonwood): 7475187
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Entry
7475187 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7475187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7475187
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7475187
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
7475187
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
zf-RING_2
FAIM1
Motif
Other DBs
NCBI-GeneID:
7475187
NCBI-ProteinID:
XP_002321406
UniProt:
A9PF22
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Position
15:835223..838449
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AA seq
332 aa
AA seq
DB search
MEFDNIECVSSSDGLDEDEIHHHNLQHHLHQFASSKPHNVNNNHNNGNTIVVGGPTAIAP
ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVQNRCPTCRQELGDIRCLALEKV
AESLEFPCKFYNLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSVVGDIPFLVTHLRD
DHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFL
RFMGDETEARNYTYSLEVGGHGRKLTWEGTPQSVRDSHRKVRDSHDGLIIQRNMALFFSG
GDRKELKLRVTGRIWKEQQNPETGVCIPNLCS
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgataacattgaatgcgtgtcatcatcagatggacttgatgaggatgagatc
catcaccataatttacaacaccacctacatcaatttgcatcatcaaagcctcacaatgta
aacaacaaccacaacaacggtaataccattgttgttgggggtcctactgcgattgctcct
gcaactagtgttcatgagctgctagaatgtcctgtttgtaccaattctatgtacccacca
atccatcagtgtcacaatgggcacacgctatgttccacctgtaaaacaagggtacaaaat
cgctgccctacttgcaggcaggagctcggagacattaggtgtttagccctagagaaggtg
gctgagtcactggaatttccttgcaaattttacaacttggggtgcccggagatatttcca
tattacagcaagctcaagcacgaggcaatttgcaacttcagaccatataattgcccctat
gctggatcagaatgctctgttgttggagatattcctttcctggttacgcatctaagggat
gatcacaaggtggacatgcatacaggatgcactttcaaccatcgctatgtgaagtctaat
ccccgcgaagtggagaatgccacttggatgttgacggtcttccattgttttggtcagtac
ttctgccttcactttgaagctttccagcttggcatggcccctgtttatatggcattcctc
cgtttcatgggtgatgagactgaggctcggaattatacctacagccttgaggtcggggga
catggcaggaaactgacatgggagggcaccccacaaagtgttcgagatagccaccggaaa
gtcagggatagtcatgatggtctcattattcaacgaaacatggcacttttcttctctggt
ggggataggaaggagctgaagctaagagttaccgggaggatatggaaggaacaacaaaat
ccagaaactggagtgtgtatacccaacctttgtagctaa
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