Populus trichocarpa (black cottonwood): 7475429
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Entry
7475429 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7475429 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7475429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7475429
Spliceosome [BR:
pop03041
]
Complex C
Other components
Step II factors
7475429
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_SCAP
PAN2_N
Motif
Other DBs
NCBI-GeneID:
7475429
NCBI-ProteinID:
XP_002315592
UniProt:
B9HSV2
LinkDB
All DBs
Position
10:9336972..9342009
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AA seq
574 aa
AA seq
DB search
MDLLQNYQNDGELDQNPNSSPDSSPPRLLPSKSAAPKVDDTMLALTVANQMLSKPIDPVQ
HVVAFNPTYDQLWAPVLGPAHPYAKDGIAQGMRNHKLGFVEDAAIDSFVFDEQYNTFHKY
GYAADPSASAGNNYIGDLDVLEKNNGISVYNIPQHEQKKRKIEKKTEAVEDDDDGMDKEE
VENPATDAWLMKNRKSPWAGKKEGLQTELTEEQKKYAEEHARKKEEKAGGEKGELVADKT
TFHGKEERDYQGRSWIAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLIL
SAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGSKFLTAGYDKNIKYWDTETGQ
VISSFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTIT
FVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNMNWLAAQSLDNQI
LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT
LKCHEGVCIGAEWHPLEQSKVATCGWDGLIKYWD
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctccaaaactaccaaaacgacggagaattagaccaaaaccctaattcctct
ccggattcatcccctccacgtctcctcccttccaaatccgccgctcccaaagtcgacgac
accatgctagccctaacagtagccaatcaaatgctctctaaacctatcgaccccgtccag
cacgtcgtcgctttcaaccctacctacgaccagctgtgggctccggttttaggccccgcc
catccctacgccaaggacggcattgcccagggcatgcgcaaccacaagctcggcttcgtc
gaggacgccgccattgattccttcgtcttcgacgagcagtacaacactttccacaagtat
ggctacgcggctgacccctctgcttctgcaggtaataattatattggtgatttggatgtt
ttagaaaaaaataatgggatttctgtttataatattccgcaacatgaacaaaagaagcga
aagattgagaagaaaacggaagctgttgaggatgacgatgatggaatggacaaggaagag
gttgagaatccggctacggatgcgtggttgatgaagaataggaagagcccttgggctggt
aagaaggagggattacaaactgagttgactgaagagcagaaaaaatatgcggaagagcac
gcgaggaagaaggaggagaaagctggtggtgaaaaaggtgagcttgttgctgataagact
acttttcatggtaaagaagagagggattatcaagggaggtcgtggattgcgccacctaaa
gatgctaaagctagtaatgatcattgttatatacccaagagattggtgcatacatggagt
ggccatactaaaggagtttctgctataaggtttttccctaaacatggccatttgatactt
tctgcgggtatggatacgaaggtgaagatatgggatgtgtttaattcgggaaagtgtatg
agaacttatatgggtcattctaaggctgtcagggatatttcattttgtaacgatggctcc
aagtttttaactgctggttatgataagaatattaagtactgggacacagagacgggccag
gttatctcttcgttttcgactgggaagattccatatgttgttaagctcaatcctgatgat
gataagcagaatatattgttggcgggtatgagtgataagaagattgtgcagtgggatatg
aacacagggcagattactcaggagtatgaccagcatttgggggcagtgaataccatcaca
tttgtggataataacaggagatttgttacttcaagtgatgataaatcactccgtgtatgg
gaatttgggatccctgttgttattaagtatattagtgagcctcacatgcattctatgcca
tcgatctctcttcatcccaatatgaattggcttgctgcgcagagtttggataaccagatt
cttatttatagtactagggaaagattccagttgaataagaagaagaggttcgctggtcac
attgtggctggttatgcttgtcaagtcaatttctcaccagatggaagatttgttatgtca
ggagatggtgagggtaaatgctggttttgggactggaagagttgtaaagttttcaggacc
ctcaaatgtcacgagggagtctgcattggggctgagtggcatccgctggagcaaagtaaa
gtggccacttgtggctgggatggattgattaaatactgggactag
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